Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10490 1345 / 0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1) AT3G57940 1318 / 0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1), Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006807 [exp] 1910 / 0 AT1G10490 1424 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079300 [exp] 1467 / 0 AT1G10490 1455 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1) Potri.005G085600 [exp] 1447 / 0 AT1G10490 1429 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05127 [flax] [poplar] Helicase_RecD Helicase CL0023 [flax] [poplar] P-loop_NTPase PF08351 [flax] [poplar] DUF1726 Domain of unknown function (DUF1726)
Representative CDS sequence Show only first row Show all	>Lus10005792 pacid=23174738 polypeptide=Lus10005792 locus=Lus10005792.g ID=Lus10005792.BGIv1.0 annot-version=v1.0 ATGAGGAAGAAAGTGGACGAGAGAATCAGAACCTTGATCGAAAATGGCGTCAAATTGAGGCACCGTTCCATGTTCGTCATCGTCGGCGACAAGTATCGGG AGCAGGCACGGCTTAGTCGAATTTCTTATGAGCTTACCATTGTTAATCTTCATTACATGCTGAGCAAAGCAGTTGTGAAGTCCAGGCCGACTGTTCTATG GTGCTACAAGGATAAGCTCGATATCAGCAGTCATGCGAGAAAGCGAGCGAAGCAGATGAAGAAGTTTATGCAGAGAGGGTTGTTGGATCCTGAGAAGGCT GATCCATTCCAGCTATTTGCTGAAACTGGAGGGATAACTTATTGTTACTACAAGGACTCTGAAAGGATTCTTGGGAATACTTTTGGAATGTGCATATTGC AGGACTTTGAGGCTTTGACTCCGAATCTCTTGGCCAGGACAATCGAAACAGTTGAAGGTGGCGGACTTATCATACTGCTTCTCCGGTCTCTCACCTCCTT GACCAGTTTGTACACCATGGTTATGGATGTGCATGATAGGTTTCGGACTGAATCCCATTCTGAGGCTACTGGGCGTTTCAATGAGCGGTTTTTGTTGTCA GTTGCCTCATGCAAAGCATGTGTTGTTATGGATGATGAGCTGAATGTCTTGCCGATATCCTCTCATATAAGGTCAACTACTCCTGTTCCAGTTAAAGAGG ACTCCGAAGGTCTCTCAGAGGCAGAGCGGCAGTTAAAAGATTTAAAAGAAGAGCTGCATGATAGTTATCCCGCTGGCTCTTTGGTTAAGAAATGTTGTAC ACTAGACCAGGGTAACGCAGTTGTGCAATTTTTGGATGCAATATTGGAGAAGACCTTGCGTAGCACGGTGGCTCTACTTGCTGCTCGTGGACGTGGCAAG TCAGCTGCACTTGGTTTGGCAGTGGCAGGGGCAGTTGCAGCCGGGTACTCCAATATATTTGTAACGGCACCAAGCCCAGAAAATCTTAAAACACTGTTTG AGTTCATATGCAAGGGCTTTGATGCCCTTGATTACAAGGAACACATAGATTATGATGTTGTTCAAAGTTCTAACTCGGAATTCAAGAAGGCAATTGTCCG GATAAATATCTACAAGCAACACAGACAAACAATTCAGTATATACAACCTCATGAATCTGCAAAGTTGTCCCAAGTGGAATTACTCATCATCGATGAGGCT GCTGCCATCCCATTGCCAGTTGTGAAGGCATTGCTGGGTCCTTATTTGGTCTTTCTCTCATCCACGGTGAATGGGTATGAAGGCACTGGCCGGTCTTTGT CATTGAAACTGCTGGATCAGTTACAGAAACAAAGCCAGTTACGTACTAATAATTCAGAGGGCTCACTTTCTGGCCGTCTTTTCAAGAAAATTGAGCTGAA CGAGTCCATCCGATACGCCATTGGTGACCCAATAGAATCCTGGCTCAACAAATTACTGTGTCTGGATACTTCGAACTTCATTCCTAACATCACTAGGTTA CCCCCACCAGAAGAATGTGATCTCTTTTACGTCAACCGTGATACTCTTTTCTCGTGTCACAAAGGAACCGAAGAGTTTTTGCAGAGAATGATGGCGTTGT ACGTTTCATCACATTATAAAAACTCTCCTAATGACTTACAGTTGATGGCTGATGCTCCTGCACACCATTTATTTGTATTGACCGCCCCATCTGATGAGTC TACAGAGGAACTTCCTGATATTCTTTGTGTTATCCAGGTCAGCCTTGAGGGCAAGATTTCTCGTAAATCTACAATGAAAAGCTTAAGTGAAGGGCATCAA CCATATGGGGACCAAATCCCTTGGAAGTTCTCTGAGCAGTTCAGGGATACGACATTTCCTACACTCTCTGGAGCTCGTATTGTACGGATTGCCACCCACC CGCATGCCATGAAGCTTGGATATGGATCTGCTGCTGTTAAACTCTTAACAAGGTACTATAGTGGAGAGCTGGCTGGTTTTTCTGAATTAGATGTAGATGG CGATTTGGAGGAGACTCCACAAGTTCGAATTACAGAAGCTGCAGAGAAGGCTTCATTGCTTGAAGAGAATATAAAACCTAGAGCAAACCTGCCGCCTCTA TTAGAACATCTACGCGACCGAAGAGCTGAGAAGCTCCACTACCTAGGTGTTTCCTTCGGGCTTACTTTGGATCTCCTTCGCTTTTGGAGGAAACATAAGT TTGCTCCCTTCTACATTGGCCAAATTCCAGTTGAGTTCGCTAAACTTTTGAGTGCTATTACTGGTGAGCATACTTGCATGCTCATCAAACCGTTGCACAA CGATGATGTCGAAGCTAACGAGTCAGATGAGTTGGGCTTCTTTGCTCCCTTCTACCAAGATTTCAGGCTAAGGTTTCTAAGACTGCTGAGTTCCAGCTTC AGATCAATGGACTACAAGCTTGCAATGAGTGTTCTTGATCCCAAAATCAACTTCACTGACACCGAGCCGAATCAAAAGCAATTCGTCCCAGATGGGTTTT CGAAATTGCTGTCTGATGAACTGTCACCGTATGATATGGAACGCCTTAGGGCTTATACTGACAGTCTTGCTGATTTTCATTTGATCCTCGACATTGTTCC AATTCTTGCCCGCCTCTACTTCCGCGGAGGGATCCCAGTTACGTTGTCGTCTGTTCAGGCATCTGTATTACTCTGCATCGGATTGCAGCAACAAAACGTC ACGCACATCGAGCAACAAATCGAGCTGGAAAGGACTCAGATTCTGTCACTGTTTATAAAACTCATGAAGAAGTTTTATAAATACCTCCACGGTGTTGCAT CCGACGAGATCCAATCAACCCTGCCCCGATTAAAAGAGAGAGTTCTGGAGCCTCTCAGCATTTCGGTGGAGGACGATCTCAATGAAGCAGCAAAGCAAGT AAAGGATAAGATGAAGAACAAGGCAGTCGAGGACCAGAACGAGAACGAGAAGAACAAGGACAAGAATCCGGCACTCCTCCAGAGATACGCAATCGAAGGG AGAGACGAAGATTTCGAGGAAGCGTTGCAGAACGGTGGTGTTAAGCTGACCTCGGGTGCGGTCGTGACCTTGAAATCAAAGGGTGAGAAATCTGGGAAGA AGAGAAGTAAAGAAGATGAGAAGCAGGGATCGAAGTCCAGTGGTAAAAAGAGAAGATCATAG
AA sequence Show only first row Show all	>Lus10005792 pacid=23174738 polypeptide=Lus10005792 locus=Lus10005792.g ID=Lus10005792.BGIv1.0 annot-version=v1.0 MRKKVDERIRTLIENGVKLRHRSMFVIVGDKYREQARLSRISYELTIVNLHYMLSKAVVKSRPTVLWCYKDKLDISSHARKRAKQMKKFMQRGLLDPEKA DPFQLFAETGGITYCYYKDSERILGNTFGMCILQDFEALTPNLLARTIETVEGGGLIILLLRSLTSLTSLYTMVMDVHDRFRTESHSEATGRFNERFLLS VASCKACVVMDDELNVLPISSHIRSTTPVPVKEDSEGLSEAERQLKDLKEELHDSYPAGSLVKKCCTLDQGNAVVQFLDAILEKTLRSTVALLAARGRGK SAALGLAVAGAVAAGYSNIFVTAPSPENLKTLFEFICKGFDALDYKEHIDYDVVQSSNSEFKKAIVRINIYKQHRQTIQYIQPHESAKLSQVELLIIDEA AAIPLPVVKALLGPYLVFLSSTVNGYEGTGRSLSLKLLDQLQKQSQLRTNNSEGSLSGRLFKKIELNESIRYAIGDPIESWLNKLLCLDTSNFIPNITRL PPPEECDLFYVNRDTLFSCHKGTEEFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLTAPSDESTEELPDILCVIQVSLEGKISRKSTMKSLSEGHQ PYGDQIPWKFSEQFRDTTFPTLSGARIVRIATHPHAMKLGYGSAAVKLLTRYYSGELAGFSELDVDGDLEETPQVRITEAAEKASLLEENIKPRANLPPL LEHLRDRRAEKLHYLGVSFGLTLDLLRFWRKHKFAPFYIGQIPVEFAKLLSAITGEHTCMLIKPLHNDDVEANESDELGFFAPFYQDFRLRFLRLLSSSF RSMDYKLAMSVLDPKINFTDTEPNQKQFVPDGFSKLLSDELSPYDMERLRAYTDSLADFHLILDIVPILARLYFRGGIPVTLSSVQASVLLCIGLQQQNV THIEQQIELERTQILSLFIKLMKKFYKYLHGVASDEIQSTLPRLKERVLEPLSISVEDDLNEAAKQVKDKMKNKAVEDQNENEKNKDKNPALLQRYAIEG RDEDFEEALQNGGVKLTSGAVVTLKSKGEKSGKKRSKEDEKQGSKSSGKKRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	0	1
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	1.4	0.9596
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	1.7	0.9444
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	2.2	0.9380
AT5G39900			Small GTP-binding protein (.1)		Lus10007250 [exp]	4.5	0.9133
AT4G30150			unknown protein		Lus10012174 [exp]	4.9	0.9422
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	6.2	0.9479
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	6.3	0.9001
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	7.5	0.9332
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	8.4	0.9299
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	8.5	0.9102

Compare expression of checked genes

Lus10005792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.