Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17250 1010 / 0 Alkaline-phosphatase-like family protein (.1) AT2G22530 159 / 1e-39 Alkaline-phosphatase-like family protein (.1) AT3G01380 54 / 8e-07 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006806 [exp] 1719 / 0 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10025722 [exp] 177 / 4e-45 AT2G22530 1008 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10035939 [exp] 80 / 6e-15 AT2G22530 410 / 1e-129 Alkaline-phosphatase-like family protein (.1) Lus10039473 [exp] 47 / 6e-05 AT3G01380 1466 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059300 [exp] 1137 / 0 AT5G17250 1095 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.007G010600 [exp] 182 / 3e-47 AT2G22530 941 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.001G350700 [exp] 44 / 0.0007 AT3G01380 1392 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10005793 pacid=23174713 polypeptide=Lus10005793 locus=Lus10005793.g ID=Lus10005793.BGIv1.0 annot-version=v1.0 ATGGAATCGAGGTGGATAAGGTGGTGTCCATGGGGGATGCTGTTACTTCACGGATTAGCTATTCTCATCTTCACCAAAGGATTCTTGCTGACTCGGACTG AGCTTCCTTACTTCAGCAGCTGCTCCGATGCTACTGAATCTCCTTGTTTATCTATTCCTACTGCTTATTCCGATGGAAATGGTGATAATACTGTGAACGA GTATCAACATTGTTGGAGCAAACCTGCTGTGGACAAAATTGTCATTGTTATTCTTGACGCCCTTAGGTTTGATTTCCTTGCTCCGAGCGAGTTCTTTCCA GAGAAAAAACCATGGATGGACAAGCTGCCTGTGTTGCAAAATCTGGCATTCACTCAGAGGTCGTCCGCCAAGATTTTTAAGGCTATTGCAGATCCGCCTA CTACTAGTCTCCAGCGTTTGAAGGGCTTGACCACTGGTGGACTGCCTACTTTTATTGATGTAGGGAATAGCTTTGGGGCTCCAGCCATTGTTGAAGACAA TCTCATACATCAGCTGTCTAACTCCAGTTCAAATGTGCAGTTGGTGTCGAATGGAAAGCGAGTGATGATGATGGGCGATGACACATGGGTGCAGTTGTTT CCAGACCATTTCAACAGATCCTATCCTTATCCATCTTTTAATGTCAAGGATCTTGATACGGTCGACAATGGATGCATCACACACATATTTGAATCTTTAT ATCAAGAAGACTGGGATGTACTTGTTGCACATTTTCTCGGTGTGGATCATGCTGGTCATATATTTGGTGTTAATTCTGCGCAAATGGTAGAAAAATTGGA GCAATATAATAAGGTTCTGGAGGAAGTGATTGAAACGCTGAGCAGCAAATCTGGACCAGGAGGCTTACATGAGAATACTCTTCTGCTTGTTATGGGAGAC CATGGTCAAACACTCAATGGTGATCATGGAGGGGGTAGTGATGAAGAGGTTGAGACATCATTATTTGCAATGGGGTTTAAGCACCCTCCATCTTCTGTTC CTCGCGAATTCGATTCCTCTTCTTGTCTGTTAGATTCGGACGAGAAGAGGTGTGTCAGCTCCATTCAACAGCTTGATTTTGCAGCGACTGTCTCGGCATT AATTGGTGTCCCCTTTCCTTTTGGAAGCATTGGCTCTGTTAACGCCGAGCTTTATGCTTTGGCTACTGGTACTTGGAACTGGAAGGATCCTGACACTGCC AATGATCGACATCAGTCAAAGACTGTGGAATGGATGAAGAACTATGTTAATACACTTTGCATCAATTCTTGGCAGGTGAAAAGATACATTGATGTTTATT CAGCATCATCAATCATTGGATTTTCGTCCGAAGACTTGGTTCGCATATCAACCAAGTATGCTCAATTAGAGGAGAATTGGTCCCGTGCTATAAAAAAGCT ATTCTCAACACAAACCGAGAACAATCCCTCATTACTACACCAGATTACCAAGCAAATTTCCGCTTATCTCGATTTCCTATCACACGTCTCGGAGCTAGCT CGCTCTAAATGGACCGAATTTAACATGACCATGATGGGTGTCGGGCTCGGGACGATGCTACTATCCTTGTTTATGATAAGTCTTTCTATACGGAGTATAA ATAAGATCAGCTTGGGATTCAGCTTTGAGTCAGGATTGGCCTTTGCTATAGTGGTGATACGAGCTTGCAGCTTCCTTTCGAATAGTTACATCCTGGGAGA AGGCAAAGTTGCATGTTTCTTGCTGGCCACCACTGGCATTGCAAAACTACGTTGTTCACTGATCAGAAAAGAGATGCTAGTTGAAGCGATTACCTTTCTT CTATTAGTCTTGAGTCTCAGATTCTCCATCGAAATCGGGATGTCTAAACAGGCTGCCACATCAGCGTTCATGCACGCTTCTAGTTCATGGATATCCGGGA TTGCTCTCGGTGATGCATTATGGGCTTACACTTCCGAACTCGGGCCGTTCTTAGCCATTGTTTGTCTATCTGGCATAGTTTACAAAGCAGCAATCACAAA TTCTCAAGGAGTCTCGAAATACATTCTCTTGTTGACGATTCCAAGTTATCTCCTCATAGCAATGCATTGGGCGCTCGAGAGTAATGTGAAGAGTCTGTCG ATGTTGTTTGAAGGACTTGGGAGAAACTACATCCCTCAAGCAGTTTATGCCATTGGGGTTTCCCAACTGCTGTTTCTAGCATTTGGTGCTCTATTCACAG AACCCAAAAAAACCATAGCTGTGGAAAAAAGTTTGGCGACGAAAGCAATTTGCATGCTGTCTGCATGGAGCCCGACGATCATCATGTTGTCTGGAAAACA AGGTCCTTGGATTGCATTGGCAGCGATAGTCGGAGGTTACTGCATAACGAGGTTGGCGTTAATAGGAAAGAACAGAGATGTAGGGACGACTAGAATCTCG AACTTCAATCCACTTGCAGTGACACAGTGGAATCTTTTAGCTGTATGTCTGTTTTTCGCCACTGGGCACTGGTGTGCTTTTGATGGCCTTCGCTATGGTG CTGCATTTGTCGGATTCGACGAGTTTATTCTTGCCCGGCAAGCAATCCTTCTGACACTGGAGACATTTGGGTTTTCCCTCATCCTTCCCGTTCTTGGCCT CCCGTTTCTTCTTCTGGGATGCCATCAGATGAACCATGGGAAGAATATTCTCTATAATCAGCTGTCCCAGGTGTATTTGGCTTATGGACTCATCACAGCG ACCACAGTGACAGCCACTGTATTGTGTGTTACTATCCAAAGGCGGCACCTCATGGTTTGGGGATTGTTTGCTCCAAAATTTGTTTTCGACGTTGTGGCTC TTATTCTAACCGAAGGCATGATTTGCTTGACTTCCCTCTTCTATTCGAAGTAA
AA sequence Show only first row Show all	>Lus10005793 pacid=23174713 polypeptide=Lus10005793 locus=Lus10005793.g ID=Lus10005793.BGIv1.0 annot-version=v1.0 MESRWIRWCPWGMLLLHGLAILIFTKGFLLTRTELPYFSSCSDATESPCLSIPTAYSDGNGDNTVNEYQHCWSKPAVDKIVIVILDALRFDFLAPSEFFP EKKPWMDKLPVLQNLAFTQRSSAKIFKAIADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAIVEDNLIHQLSNSSSNVQLVSNGKRVMMMGDDTWVQLF PDHFNRSYPYPSFNVKDLDTVDNGCITHIFESLYQEDWDVLVAHFLGVDHAGHIFGVNSAQMVEKLEQYNKVLEEVIETLSSKSGPGGLHENTLLLVMGD HGQTLNGDHGGGSDEEVETSLFAMGFKHPPSSVPREFDSSSCLLDSDEKRCVSSIQQLDFAATVSALIGVPFPFGSIGSVNAELYALATGTWNWKDPDTA NDRHQSKTVEWMKNYVNTLCINSWQVKRYIDVYSASSIIGFSSEDLVRISTKYAQLEENWSRAIKKLFSTQTENNPSLLHQITKQISAYLDFLSHVSELA RSKWTEFNMTMMGVGLGTMLLSLFMISLSIRSINKISLGFSFESGLAFAIVVIRACSFLSNSYILGEGKVACFLLATTGIAKLRCSLIRKEMLVEAITFL LLVLSLRFSIEIGMSKQAATSAFMHASSSWISGIALGDALWAYTSELGPFLAIVCLSGIVYKAAITNSQGVSKYILLLTIPSYLLIAMHWALESNVKSLS MLFEGLGRNYIPQAVYAIGVSQLLFLAFGALFTEPKKTIAVEKSLATKAICMLSAWSPTIIMLSGKQGPWIALAAIVGGYCITRLALIGKNRDVGTTRIS NFNPLAVTQWNLLAVCLFFATGHWCAFDGLRYGAAFVGFDEFILARQAILLTLETFGFSLILPVLGLPFLLLGCHQMNHGKNILYNQLSQVYLAYGLITA TTVTATVLCVTIQRRHLMVWGLFAPKFVFDVVALILTEGMICLTSLFYSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17250			Alkaline-phosphatase-like fami...		Lus10005793 [exp]	0	1
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	3.5	0.8908
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	3.6	0.9048
AT5G01460			LMBR1-like membrane protein (....		Lus10002488 [exp]	4.2	0.8740
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	8.5	0.8784
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	12.0	0.8751
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	12.1	0.8843
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	15.9	0.8613
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	19.3	0.8343
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	30.6	0.8497
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	31.0	0.8719

Compare expression of checked genes

Lus10005793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.