Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21870 320 / 1e-111 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006806 [exp] 437 / 7e-146 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10012682 [exp] 400 / 6e-143 AT2G21870 320 / 1e-111 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079500 [exp] 343 / 1e-120 AT2G21870 343 / 1e-120 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Potri.005G085500 [exp] 337 / 5e-118 AT2G21870 322 / 2e-112 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005794 pacid=23174727 polypeptide=Lus10005794 locus=Lus10005794.g ID=Lus10005794.BGIv1.0 annot-version=v1.0 ATGGCGTTCACTTCTCGCCTCCTGTCCAGATCCAGACAGCTCTATGGCACTCAGGTTGTTTTCCAGCATGAGTCTGCTATTCCAGCTCGTTACTTTTCGG CAAAATCTGACCCTCAGCCAAAGTCTCTGAAGGGAGATGATATGCTAAAGAACATTTTTATGGAAGTGAAGAAAAAGTATGAGACGGCCGTGGGAGTACT TCGACAGGAGAAGATAACTATAGCACCGGAAGATCCTGCTGCTGTTGCTCAATATGTAAAGGTCATGAAGAGTGTCAGGCAGAAGGCTGACTTGTTATCT GAATCTCAGAGTATCAAGAACACCATTGTCGAAGAAACTAGAGATATTCCAGATGCTCGCTCTTACTTGCTGAAATTGCAGGAACTACGAATTAATCAAG GTTTGAAAGACGACCTTGGTGCCGAAACAATGATGATGGATGCCTTGGAAAAAATTGAGAAAGAAGTCAAGAAACCTCTCATGAGGAATGATAAGAAAGG AATGGCTCTTCTCATGGCTGAGTTCGATAAGATCAACCAGAAGCTGGGAATTAAGAGAGAAGAGCTGCCAAAGTACGAAGAACAGTTAGAAGTCAAAATG GCTAAAGCACAACTAGAGGAGCTGAAGAAAGATGTCCACGAAGCGATGGAAACCCAGAAGAAACGGGAGGAGTTCAAAGATGAGGAAATGCCCGACGCGA AATCTCTAGACATCCGAAATTTCATCTGA
AA sequence Show only first row Show all	>Lus10005794 pacid=23174727 polypeptide=Lus10005794 locus=Lus10005794.g ID=Lus10005794.BGIv1.0 annot-version=v1.0 MAFTSRLLSRSRQLYGTQVVFQHESAIPARYFSAKSDPQPKSLKGDDMLKNIFMEVKKKYETAVGVLRQEKITIAPEDPAAVAQYVKVMKSVRQKADLLS ESQSIKNTIVEETRDIPDARSYLLKLQELRINQGLKDDLGAETMMMDALEKIEKEVKKPLMRNDKKGMALLMAEFDKINQKLGIKREELPKYEEQLEVKM AKAQLEELKKDVHEAMETQKKREEFKDEEMPDAKSLDIRNFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10005794 [exp]	0	1
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	1.0	0.8913
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	2.4	0.8686
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	4.7	0.8788
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	5.3	0.8498
AT2G41150			unknown protein		Lus10022403 [exp]	5.9	0.8648
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	6.0	0.8725
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	8.3	0.8394
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	8.9	0.8618
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	10.1	0.8463
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	10.8	0.8522

Compare expression of checked genes

Lus10005794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.