Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64813 419 / 7e-145 LIP1 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) AT5G09910 378 / 1e-128 Ras-related small GTP-binding family protein (.1) AT1G49300 72 / 3e-14 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT1G43890 71 / 1e-13 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT4G09720 70 / 2e-13 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT1G52280 67 / 1e-12 AtRABG3d RAB GTPase homolog G3D (.1) AT3G18820 67 / 1e-12 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT3G16100 66 / 3e-12 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT2G21880 65 / 7e-12 AtRab7A, AtRABG2 ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB GTPase homolog 7A (.1.2) AT1G22740 65 / 7e-12 RAB75, RAB7, AtRABG3b RAB GTPase homolog G3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006805 [exp] 571 / 0 AT5G64813 500 / 4e-177 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Lus10040468 [exp] 70 / 2e-13 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10029745 [exp] 72 / 6e-13 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 71 / 7e-13 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10035872 [exp] 67 / 3e-12 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10039051 [exp] 60 / 2e-10 AT5G47520 259 / 2e-89 RAB GTPase homolog A5A (.1) Lus10023910 [exp] 61 / 3e-10 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10022608 [exp] 61 / 4e-10 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10025516 [exp] 60 / 6e-10 AT2G31680 381 / 2e-136 RAB GTPase homolog A5D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085100 [exp] 456 / 2e-159 AT5G64813 476 / 4e-170 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Potri.007G080100 [exp] 416 / 2e-143 AT5G64813 439 / 4e-155 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Potri.009G115000 [exp] 71 / 9e-14 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.004G153400 [exp] 70 / 2e-13 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.002G074400 [exp] 67 / 1e-12 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.001G182900 [exp] 67 / 2e-12 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.005G085300 [exp] 66 / 4e-12 AT4G09720 291 / 3e-101 RAB GTPase homolog G3A (.1.2.3.4) Potri.002G062400 [exp] 66 / 5e-12 AT4G09720 375 / 1e-134 RAB GTPase homolog G3A (.1.2.3.4) Potri.003G053400 [exp] 65 / 1e-11 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.016G097800 [exp] 63 / 4e-11 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10005795 pacid=23174729 polypeptide=Lus10005795 locus=Lus10005795.g ID=Lus10005795.BGIv1.0 annot-version=v1.0 ATGTTTTGGCGCGATCGTGAAAAGGAGAGCAAGGATCTTCTTAATGGCGGACCTCCGTGTGGCCTGGTACGAGTTCTTGTTGTTGGCGATTCAGGTGTGG GGAAAACTTCTCTGGTTAATCTGATGGTCAAAGGCTCTTCATCGGCTCGCCCTTCTCAGACAATTGGATGCAATGTTGATGTCAAGCACATTACTTACAG TAGTAGTGGCAGCTCTTCAAGCAGCACGAGAGGCGATGGTGGTGAGAGAGATTTCTTCGTGGAGCTCTGGGATGTGTCTGGACATGAGCGTTACAAAGAC TGTAGATCTCTTTTCTATTCCCAAATTAATGGAGTTATATTCGTTCACGATCTCTCTCAAAGAAGGACAAAGACGAGCTTGCTAAAATGGGCTTCAGAAG TTTCTGCAACGGGAACATTTTCAGCTCCGCTGGGTTCCGGGGGTCCTGGTGGTCTCCCTGTACCTTACATTGTCATTGGAAACAAAGCTGACGTTGCAGC AAAGGAAGGCACAAGAGGAAGCAGTAGCAACCTGGTCGATGCAGCTCGCCAGTGGGTCGAGAAGCAAGGCCTACTTCCGACCAGTGAGGAACTCCCTTTG ACCGACAGTTTCCCAGGCAGTGCAGGGCTCCTTGCAGCTGCCAAAGAAGCAAGATATGACAAGGAAGCTGTGGCCAAGTTTTTCCGTATGTTAATCCGAA GAAGATACTTCTCGAACGAGTTACTCACTCCGAATTCATGGTCAGTTTCTTCAGCTCAGGGATCACAGCAGCGTCTCGATGAAAGTATCGGCGACGAGGA CCCGTTCTACAAGAGCACAAGTCTAGTTGGAGACCCTTACAAGTACAACAATCTGCCTCCGTTGCCAGCTCAGCGCAATCTCACGCCGCCTCCCACGCTC TATCCTCAGCAGCCAGTTTCGGCAATGGAGAACTACAGCTTCCCGAGATTCCCCTCGTTGAACTCGCAAGAAATCAGCAGCAGTAGCAGTGCGAGGTCGA AACGGTTGGACATCAATACTTCCACGCGCGAGCGTGTTGTGCACGCGCCCATGCTGCTTTTCGTTCCTCTCGTTGTTTTTCCGTCGTCTCGCCGGCCGTT GAATCCTCTCGCCCTTATTCCCTGGGAATCCTGCTCGGATGAGTGTGTTTCTCAACCTTCCAGCGATGAAGACTACTTTATCAGTGGCTCTATAATGGGA AAATCCGGATTTGGGAAGTGTCATGGCCGCCCTTCAATTCCTTGGTCTCCGGCGGGCTGTAACCTCCCTCTCAGCCGGCCACCGCTCCTTCTCCTCCTCA ATCAGGCTTCCACTGGAGTACGGGAGGAACAAAAGATCACGCCAGCATCCGGAGCCTCCTCAATATCAGCCACCAGAGTATCCTCCTCAAGATCAAACAT GGGGAGGAATCAGATGAGGAATCTGTCAAGATCAAATTTGGCTGAACTCACTATTCAAAGATTACAAACGAGGGTTGAAAGACACATATCGGTACGATCG AGAAACATAACCATTCCGGGTGGAGTTGAGTATTTGGTTATCTACGAGTATGGATAA
AA sequence Show only first row Show all	>Lus10005795 pacid=23174729 polypeptide=Lus10005795 locus=Lus10005795.g ID=Lus10005795.BGIv1.0 annot-version=v1.0 MFWRDREKESKDLLNGGPPCGLVRVLVVGDSGVGKTSLVNLMVKGSSSARPSQTIGCNVDVKHITYSSSGSSSSSTRGDGGERDFFVELWDVSGHERYKD CRSLFYSQINGVIFVHDLSQRRTKTSLLKWASEVSATGTFSAPLGSGGPGGLPVPYIVIGNKADVAAKEGTRGSSSNLVDAARQWVEKQGLLPTSEELPL TDSFPGSAGLLAAAKEARYDKEAVAKFFRMLIRRRYFSNELLTPNSWSVSSAQGSQQRLDESIGDEDPFYKSTSLVGDPYKYNNLPPLPAQRNLTPPPTL YPQQPVSAMENYSFPRFPSLNSQEISSSSSARSKRLDINTSTRERVVHAPMLLFVPLVVFPSSRRPLNPLALIPWESCSDECVSQPSSDEDYFISGSIMG KSGFGKCHGRPSIPWSPAGCNLPLSRPPLLLLLNQASTGVREEQKITPASGASSISATRVSSSRSNMGRNQMRNLSRSNLAELTIQRLQTRVERHISVRS RNITIPGGVEYLVIYEYG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10005795 [exp]	0	1
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	3.0	0.8165
					Lus10037253 [exp]	4.0	0.8661
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	5.9	0.8057
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	7.2	0.8270
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	7.9	0.7962
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	21.2	0.7822
AT4G08960			phosphotyrosyl phosphatase act...		Lus10040491 [exp]	24.0	0.8133
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	26.1	0.7732
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	26.5	0.7490
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	28.0	0.7555

Compare expression of checked genes

Lus10005795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.