Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031019 [exp] 76 / 1e-17 ND / Lus10031018 [exp] 0 / 1 AT3G59250 57 / 1e-08 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005797 pacid=23174720 polypeptide=Lus10005797 locus=Lus10005797.g ID=Lus10005797.BGIv1.0 annot-version=v1.0 ATGACAGGGGGAAGTTCTGGAGAGGCTCTTTGCATCGAATTACTGCCCGGTTCTCAAAACGCTAACGCTGGACCACGTGACGGGGTTGAAGAACTTCAAG AGCTTCTAAACCCTATCTATAAACTAGTTTGTCTTCGAGAACTCGAGATAGCATACCATATGAAGCTCACTAGATATGATTCTCTGTGTTCTCTGGTTGG ATTGGTTCCCCCGACTGATGCTGCAGCACCTAACCTGGAAAAATTTGTACTCCGGATTTATGAAAGAATACGAGGGTTTGCACAGGGGCGGAGTGGTAAT GACATCACAAAGGTACGTCGTGTTGACAATGGTACTGGTGCCATTCTCGAGCACCTAAAGGTGTTGGAAGTTGCAGGGTCTAGCGGGTTGAAGTATGAGG ACGAGTTCATCTCTTGTGTCATCGAGAGTGCCGTATCGCTCGAGACTGTTATCATAAACACAAGTTATCAAACTACTTATCCATGGAAAGCTACTTACTA TGGAACGTGGAGGGAGGAACAGGAGGCGGAAGACCATGTGAGGCGACATGCTAAGCTGTGGCTTGAAGGGATCATACCTCACACTGCTCAGTTGATCATC CATTCACGTTAG
AA sequence Show only first row Show all	>Lus10005797 pacid=23174720 polypeptide=Lus10005797 locus=Lus10005797.g ID=Lus10005797.BGIv1.0 annot-version=v1.0 MTGGSSGEALCIELLPGSQNANAGPRDGVEELQELLNPIYKLVCLRELEIAYHMKLTRYDSLCSLVGLVPPTDAAAPNLEKFVLRIYERIRGFAQGRSGN DITKVRRVDNGTGAILEHLKVLEVAGSSGLKYEDEFISCVIESAVSLETVIINTSYQTTYPWKATYYGTWREEQEAEDHVRRHAKLWLEGIIPHTAQLII HSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005797 [exp]	0	1
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	2.4	0.8993
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	2.6	0.9125
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	5.8	0.8578
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	7.0	0.8720
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	7.3	0.8851
AT1G15420			unknown protein		Lus10007894 [exp]	9.8	0.8709
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10008977 [exp]	10.7	0.8819
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	13.5	0.8214
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	15.3	0.8504
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	15.9	0.8586

Compare expression of checked genes

Lus10005797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.