Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64840 907 / 0 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 836 / 0 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT5G60790 206 / 1e-57 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT1G64550 203 / 4e-56 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT3G54540 181 / 4e-48 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT1G27940 74 / 2e-13 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G63270 71 / 2e-13 ABCI1, ATNAP10 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) AT2G36910 74 / 4e-13 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G28010 72 / 1e-12 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT5G03910 69 / 6e-12 ABCB29, ATATH12 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006804 [exp] 1165 / 0 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10038681 [exp] 199 / 2e-55 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 200 / 7e-55 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10023043 [exp] 201 / 5e-54 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10028810 [exp] 196 / 5e-54 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10016184 [exp] 191 / 1e-51 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10029363 [exp] 190 / 2e-51 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10037947 [exp] 179 / 1e-47 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10005249 [exp] 81 / 3e-15 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080600 [exp] 944 / 0 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 927 / 0 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.004G214300 [exp] 197 / 1e-54 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.009G007800 [exp] 193 / 4e-53 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.008G003300 [exp] 193 / 2e-52 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.001G087300 [exp] 192 / 3e-52 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.010G254400 [exp] 189 / 6e-51 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.006G211700 [exp] 79 / 7e-15 AT5G03910 709 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Potri.017G081100 [exp] 77 / 2e-14 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.006G123900 [exp] 76 / 5e-14 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10005798 pacid=23174743 polypeptide=Lus10005798 locus=Lus10005798.g ID=Lus10005798.BGIv1.0 annot-version=v1.0 ATGGAACTCTCCTCGAAGCTCCACCACCACCTCCACTACTCCACACTCTGCCCCACCTCCCTCCCGCCGAATTCCAATCTCCACAAACAAGCTCGAACGG CGGCAATCCTCCCCAGCTCAACCAGGCGGAATCTCAAGCTCAGTGCATCAGCAAGGCTGTCCACCTCCGCCGTCGAAGAAAAAGTTGATATTGAAGACAT CGAATCGCTGTTCTCTTCGAACAATTCGGCTGACGAGCAGAGGAGTAGTAGTAATCAGAATCAGAACAAGGCTTCTGCGGGAGCTTCCGGGATTACTTCA GGTGTTAAGCTTGAGAATATTAGTAAGAGTTATAAAGGGACGACGGTGTTGAAGGATGTCAGCTGGGAAGTCAAGAAAGGGGAGAAAGTAGGGTTAGTTG GTGTTAATGGAGCTGGGAAAACTACTCAGTTGAGGATCATCACTGGCCAGGAAGAGGCGGACAGTGGGAACGTGATCAAGGCGAAACCGAACATGAAGAT TGCGTTCTTGAGCCAGGAGTTTGAGGTATCGCTCACCAAAACCGTTAGGGAGGAGTTTCTGAGTGCTTTCAAAGAGGAGATGGAGGTTAAGGAGAAGCTG GAGAAAGTTCAGAAGGCGATCGAGAGGTCGGTGGATGATTTGGACCTGATGGGGAGGCTGTTGGATGAGTTTGATCTGCTGCAGACGAGAGCTCAGGGTT TGAACTCGGATGTCGTTGATGCTAAGGTCAGTAAGTTGATGCCGGAGCTTGGATTCTCCAGCGAGGATGGTGATCGGTTGGTGGCTTCTTTTAGTGGTGG GTGGCAGATGAGGATGTCTCTTGGAAAGATTCTTTTGCAGGAGCCGGATTTGTTACTCCTCGATGAGCCCACGAATCATCTCGACCTTGACACGATTGAG TGGCTTGAAAGCTATCTGCAGACACAAGATGTGCCAATGGTGATCATTTCCCATGACAGGGCCTTCCTGGATCAACTGTGTACTAAGATCGTGGAAACCG AAATGGGAGTGTCTCGCACATTCGATGGGAACTATTCCCAGTACATAATCTCAAAAGCTACTTGGATCGAAGCTCAGAATGCTGCATGGGAGAAGCAGCA GAAGGAGATTGAGCATACTAGGGAACTGATAAGTAGGTTGGGAGCAGGTGCTAACTCTGGCCGTGCTTCTACTGCAGAGAAGAAACTGGAGAGACTGAAA GAAGAGGACCAGATAGAGAAGCCGTTTCAACGCAAGCAAATGAAGATCAGTTTCCCAGAACGTGGGAGAAGCGGAAGGTCTGTAGTTGAAATCAAGAACC TTGACTTCCGGTATGGGGATCAGACGTTGTTCAAGAACACAAATCTATCGGTAGAGCGAGGAGAGAAGATCGCCATTGTTGGACCGAACGGATGTGGGAA GAGTACTTTACTGAGAGTGATAATGGGGATGGAGAAGCCGACAGGTGGCGAAATCGTACTCGGGGAGCACAATGTACTTCCAAACTACTTTGAGCAGAAC CAGGCTGAGGCTCTTGATCTCGAAAAATCGGTGCTCGACACAGTGGCAGATGTTGCAGAAGATTGGAGACTCGATGACATTAAAGGTCTCCTTGGACGTT GTAACTTCAAGGCTGATATGCTTGATAGAAAGGTCTCTCTTTTGAGTGGTGGCGAGAAGGCACGTCTGGCATTCTGTAAGTTCATGGTGAAGCCTTCAAC TTTGCTAGTCCTTGACGAACCTACCAACCACTTGGATATACCTTCGAAAGAAATGCTCGAGGAAGCTATAGCAGAGTACACAGGCACGGTCATCACCGTG TCTCACGATCGTTACTTCATAAAGCAGATCGTCAACAGAGTAATCGAAGTTAAAGATTGCAAGCTACAGGACTACAATGGCGATTACAACTATTACTTGG AGAAGAACCTCGAAGCAAGGGAGAAAGAGCTCGAGCGGGAGGCGATGATCGAGGACAAAGCTCCCAAAGTGAAGGCGAAATCGAAGATGTCCAAGGCCGA GAAGGAAGCAAGGAAGAAGCAGAAAGTGCAGGCGTTCCACGCTGCAAAGCAGAAGTCGAAAGGGTCGAAGAATTCAAAAAGATGGAACTGA
AA sequence Show only first row Show all	>Lus10005798 pacid=23174743 polypeptide=Lus10005798 locus=Lus10005798.g ID=Lus10005798.BGIv1.0 annot-version=v1.0 MELSSKLHHHLHYSTLCPTSLPPNSNLHKQARTAAILPSSTRRNLKLSASARLSTSAVEEKVDIEDIESLFSSNNSADEQRSSSNQNQNKASAGASGITS GVKLENISKSYKGTTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIITGQEEADSGNVIKAKPNMKIAFLSQEFEVSLTKTVREEFLSAFKEEMEVKEKL EKVQKAIERSVDDLDLMGRLLDEFDLLQTRAQGLNSDVVDAKVSKLMPELGFSSEDGDRLVASFSGGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIE WLESYLQTQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYIISKATWIEAQNAAWEKQQKEIEHTRELISRLGAGANSGRASTAEKKLERLK EEDQIEKPFQRKQMKISFPERGRSGRSVVEIKNLDFRYGDQTLFKNTNLSVERGEKIAIVGPNGCGKSTLLRVIMGMEKPTGGEIVLGEHNVLPNYFEQN QAEALDLEKSVLDTVADVAEDWRLDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIAEYTGTVITV SHDRYFIKQIVNRVIEVKDCKLQDYNGDYNYYLEKNLEAREKELEREAMIEDKAPKVKAKSKMSKAEKEARKKQKVQAFHAAKQKSKGSKNSKRWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	0	1
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	1.4	0.9515
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	1.7	0.9403
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	2.2	0.9351
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	2.4	0.9494
AT5G55570			unknown protein		Lus10008950 [exp]	4.5	0.9399
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	5.2	0.9159
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10017471 [exp]	5.9	0.9207
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	6.5	0.9014
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	6.5	0.9328
AT3G52740			unknown protein		Lus10017046 [exp]	7.5	0.9176

Compare expression of checked genes

Lus10005798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.