Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 60 / 7e-11 Plant protein of unknown function (DUF247) (.1) AT3G50150 60 / 1e-10 Plant protein of unknown function (DUF247) (.1) AT3G50170 58 / 3e-10 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50180 58 / 5e-10 Plant protein of unknown function (DUF247) (.1) AT3G50130 55 / 4e-09 Plant protein of unknown function (DUF247) (.1) AT2G36430 54 / 1e-08 Plant protein of unknown function (DUF247) (.1) AT3G50140 53 / 2e-08 Plant protein of unknown function (DUF247) (.1) AT5G22540 49 / 3e-07 Plant protein of unknown function (DUF247) (.1) AT3G47210 47 / 2e-06 Plant protein of unknown function (DUF247) (.1) AT3G47250 46 / 4e-06 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 230 / 2e-74 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 66 / 7e-13 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 48 / 1e-06 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10017132 [exp] 45 / 1e-05 AT3G50120 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Lus10018320 [exp] 45 / 2e-05 AT3G50120 210 / 2e-61 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 43 / 6e-05 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 42 / 0.0001 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 42 / 0.0002 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 41 / 0.0002 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071400 [exp] 158 / 2e-46 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 151 / 5e-44 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 149 / 3e-43 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 147 / 1e-42 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G071200 [exp] 125 / 2e-34 AT3G50120 244 / 1e-74 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 61 / 4e-11 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 52 / 5e-08 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 50 / 2e-07 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 49 / 5e-07 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 46 / 5e-06 AT4G31980 232 / 3e-69 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10005799 pacid=23174748 polypeptide=Lus10005799 locus=Lus10005799.g ID=Lus10005799.BGIv1.0 annot-version=v1.0 ATGCTGTCATCGAGGTGGTTGGGGTGCTACGAGACATGTAAAGCCCTCTTGAAGGGGCGTGGAAGGAGGAGGACACCGAAGAGGGGTTTGAAGATGATGA TTGTTGATGGGTGTTTTATGTTGGAGGTTTTGCGGATTGGTACTCATACGTTGGATGATTATGCGACGAATGACCCGGTTTTCAGCGGCCATGGGAGGCT CTACATTATGCCCTATATAAGGCGTGACCTTGAGAATCAGCTGCCTATGGTGCTACTTGACAAGTTGATTGCTGTTGAGAGCAATGGTACCAAGGATGAG GAGTTTGTGAACAAGCTCATACAAAAATTCTGCCTACCAAACACGCCTGTAGCCCGTCTAGGCAAATGCAAGCACGTGCTCGACGCTTACAGGAAGAGCC TCCTTCACAAGGACGAGATCCGCTCGAAAAACATGAGACCTCGTCGCCGTCATCGTCCCCCGCGCTATAAAGCGGAGGACGGACCGAGGTGCACGAAGCT GGAATCCAATTCAAAAGGAGCAGAACTGGAAGCCTGA
AA sequence Show only first row Show all	>Lus10005799 pacid=23174748 polypeptide=Lus10005799 locus=Lus10005799.g ID=Lus10005799.BGIv1.0 annot-version=v1.0 MLSSRWLGCYETCKALLKGRGRRRTPKRGLKMMIVDGCFMLEVLRIGTHTLDDYATNDPVFSGHGRLYIMPYIRRDLENQLPMVLLDKLIAVESNGTKDE EFVNKLIQKFCLPNTPVARLGKCKHVLDAYRKSLLHKDEIRSKNMRPRRRHRPPRYKAEDGPRCTKLESNSKGAELEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	4.9	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	6.9	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	8.5	1.0000
					Lus10024141 [exp]	9.8	1.0000
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	10.5	0.9887
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	11.0	1.0000
					Lus10013255 [exp]	12.0	1.0000
AT4G14746			unknown protein		Lus10035902 [exp]	12.6	0.9450
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	12.7	0.9305
					Lus10013259 [exp]	13.0	1.0000

Compare expression of checked genes

Lus10005799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.