Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 444 / 4e-148 Protein kinase superfamily protein (.1) AT1G54610 432 / 2e-145 Protein kinase superfamily protein (.1.2.3) AT1G71530 417 / 5e-141 Protein kinase superfamily protein (.1.2) AT5G50860 417 / 3e-139 Protein kinase superfamily protein (.1) AT5G44290 415 / 2e-137 Protein kinase superfamily protein (.1.2.3.4) AT1G09600 415 / 1e-136 Protein kinase superfamily protein (.1) AT1G74330 414 / 2e-136 Protein kinase superfamily protein (.1.2) AT1G33770 410 / 4e-136 Protein kinase superfamily protein (.1) AT1G18670 409 / 2e-134 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT3G05050 404 / 5e-134 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006800 [exp] 874 / 0 AT1G53050 449 / 7e-151 Protein kinase superfamily protein (.1) Lus10002469 [exp] 528 / 0 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10000584 [exp] 526 / 0 AT1G53050 429 / 1e-142 Protein kinase superfamily protein (.1) Lus10012805 [exp] 442 / 4e-149 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 432 / 5e-145 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 432 / 6e-145 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 430 / 5e-144 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 434 / 6e-144 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001285 [exp] 432 / 1e-143 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077600 [exp] 696 / 0 AT1G54610 451 / 8e-153 Protein kinase superfamily protein (.1.2.3) Potri.002G065100 [exp] 553 / 0 AT1G54610 435 / 2e-146 Protein kinase superfamily protein (.1.2.3) Potri.005G086900 [exp] 533 / 0 AT1G53050 323 / 3e-102 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 444 / 3e-150 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 440 / 5e-148 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 439 / 1e-147 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 437 / 5e-147 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 435 / 6e-146 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 439 / 7e-146 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 434 / 4e-144 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005801 pacid=23174737 polypeptide=Lus10005801 locus=Lus10005801.g ID=Lus10005801.BGIv1.0 annot-version=v1.0 ATGGGGTGCATCCAATCAAGCAAGCGGCGGCGGAAGCAGCCGCTGGCGTGGGGTCCCACTACTCTGCCGTCCAACCATGAGAAAGAAGGTAGCAAGAATA GTAAGGATCACTTGGATAATGTTGTTAAGGTGGCGGTGGAGGGGGCGACGGCGGTTGGCGGCGGAGGCGGCGGGAAGAAGGGTCAGAAAGTGGTGTTGAA GAAAATCGGTACGGATGATTACGTGGATGGTTGGCCGAAGTGGCTTGTTGATAATATACCGAAAGATGTGTTGGTTGGTTTGGTGCCCAAAAGTGCTGAT TCTTATGATAAGCTTGCCAAGATTGGTCAGGGAACTTACAGCAATGTGTACAAAGCTAGAGACAGAGACAGCGGGAAGATTGTGGCATTGAAGAAAGTTA GGTTCGATACATCCGAACCAGAGAGCATCAAGTTCATGGCTAGGGAGATCATGGTTCTTCAGAAACTTGATCATCCGAACATCATCAAACTGGAAGGAAT CGCCACTTCGAGGATGCAATATAGCCTCTATCTCGTGTTCGACTACATGCAGTCCGACCTCACCCGAATCATCTCTCGTCCATCTCAACGACTCACCGAG CCACAGGTGAAATGCTACATGAAGCAGCTTCTCATGGGGCTACAGCACTGCCACGAGAAAGGGATCCTACACAGGGACATCAAAGGTTCGAACCTGTTGA TAGACAAAAATGGGATGCTGAAGATAGCAGATTTCGGGCTAGCGAATTTCTTCATCCCCAAGCCGAAACGACCCTTGACAACAAGGGTCGTCACACTATG GTACAGGGCTCCAGAGCTTCTTCTTGGAGCCACTGACTATGGTGTCGGGATTGATCTCTGGAGTGCTGGTTGTCTGTTGGCTGAGATGTTTGTCGGGAGG CCGATCATGCCTGGCAGAACCGAGGTTGAGCAAATACACAGGATATTCAAGCTGTGCGGCTCACCGGCGGAGGACTACTGGAAGATAATGAGGCTTCCGA CAAGTTTCCGGCCACCGCAACACTACAAACCGAGTTTCCAAGAATCGTTCAAGGACATGCCGGCTTCCTCCATTTCCCTTCTCACAACTCTTCTCTCCCT CAACCCTTCATATCGTGGAACTGCTACTTCTGCTCTCCAAACCCAGTTCTTCACTACAATTCCATTGGCATGCGAGCTTTCTGGCTTGCCAGTGATCCAG AAGCCAGATGACGAAGGTGCCCGAACCGGTATTCGCAAGAAGCGCAAGAAATCAAAGAAGCAAGCCACTGGTCAAACTAATGAAGCTAGTAACACGAAGC AAGCTGCTACTGCAGGCAAGGATGATGTTGATCAATCTTCCAAAGAGCTGGAGAAGATGTCAGAAGCAAGCACAACACACAGCCAAGAAGAAAACACAAC AGCAACAAGCATATTCAGCCAAGAAGCAACAGGAGGCAACAGCACTAGCAGCAGCACTAGTTCCAGCCTCAAACCAGTCAGAGAAGAACAAGAAGAAGAA CATCATCAGAAACACCGTTGCCGCCACCCTTCATTCTCGCCAGTGGAACGACGTCCACAGCTCCGTGACTGGTCTCACCGAACCGAGGCACACCCCAATG CTTCGAAGAACATCCAGAACAACTTCACCCTTCTACAGGCATCAGTCTCGGACATCCTCAACCCCCACCACAGCGTTACAGCCGGAGGAGGAGTCAATGG CGGAGGGATGCAGAACTACCGCCGGTCGATGTCCACGTTGGACTTCTGTGCTCTTGATCCTGACAAGATCTCCAAGCTTTTTGGACTTGATGATGACCAT AGAGGCCAGCTTCTGCATAAGTCCAGCTTCATTATGTAG
AA sequence Show only first row Show all	>Lus10005801 pacid=23174737 polypeptide=Lus10005801 locus=Lus10005801.g ID=Lus10005801.BGIv1.0 annot-version=v1.0 MGCIQSSKRRRKQPLAWGPTTLPSNHEKEGSKNSKDHLDNVVKVAVEGATAVGGGGGGKKGQKVVLKKIGTDDYVDGWPKWLVDNIPKDVLVGLVPKSAD SYDKLAKIGQGTYSNVYKARDRDSGKIVALKKVRFDTSEPESIKFMAREIMVLQKLDHPNIIKLEGIATSRMQYSLYLVFDYMQSDLTRIISRPSQRLTE PQVKCYMKQLLMGLQHCHEKGILHRDIKGSNLLIDKNGMLKIADFGLANFFIPKPKRPLTTRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFVGR PIMPGRTEVEQIHRIFKLCGSPAEDYWKIMRLPTSFRPPQHYKPSFQESFKDMPASSISLLTTLLSLNPSYRGTATSALQTQFFTTIPLACELSGLPVIQ KPDDEGARTGIRKKRKKSKKQATGQTNEASNTKQAATAGKDDVDQSSKELEKMSEASTTHSQEENTTATSIFSQEATGGNSTSSSTSSSLKPVREEQEEE HHQKHRCRHPSFSPVERRPQLRDWSHRTEAHPNASKNIQNNFTLLQASVSDILNPHHSVTAGGGVNGGGMQNYRRSMSTLDFCALDPDKISKLFGLDDDH RGQLLHKSSFIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10005801 [exp]	0	1
					Lus10011992 [exp]	3.2	0.8152
					Lus10024677 [exp]	6.8	0.7749
					Lus10001123 [exp]	11.1	0.6962
					Lus10023352 [exp]	12.4	0.6962
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	13.6	0.6962
					Lus10028048 [exp]	14.7	0.6962
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	15.7	0.6962
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	16.7	0.6962
					Lus10009177 [exp]	17.6	0.6962
					Lus10035026 [exp]	18.5	0.6962

Compare expression of checked genes

Lus10005801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.