Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09900 726 / 0 RPN5A, MSA, EMB2107 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) AT5G64760 696 / 0 RPN5B regulatory particle non-ATPase subunit 5B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006797 [exp] 853 / 0 AT5G09900 744 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076900 [exp] 772 / 0 AT5G09900 729 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) Potri.005G087100 [exp] 766 / 0 AT5G09900 731 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) Potri.002G263200 [exp] 49 / 3e-06 AT5G42970 700 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1) Potri.014G180800 [exp] 48 / 7e-06 AT5G42970 695 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10005804 pacid=23174746 polypeptide=Lus10005804 locus=Lus10005804.g ID=Lus10005804.BGIv1.0 annot-version=v1.0 ATGTTTAAGGACGGAAAAGCTAGTTTGGAGGCGGCGATTGAGCGGCTGCAGAATGCGGAGAAGCAGGCGAGGCTCGCCGGCGATGTTGCTGAGACGAGGA AGGCTGTCACCGAAATTCTGCAGCTCTGCTTCGATGCAAAGGACTGGAAGGCGCTGAACGATCAGATTCTTTTGCTCTCGAAGAAGCGTGGTCAGCTGAA ACAGGCTGTAACTGCAATGGTGCAGCAAGCAATGCAGTATATTGATCAGACACCGGATGTTGAAACTCGGATAGAACTCATTCAGACTCTTAACAATGTC TCAGCTGGAAAGATCTATGTTGAAATCGAGAGGGCACGTTTGGTTAAAAGACTTGCAAAAATTAAGGAACAACAGGGGCTTGTGGCTGAAGCCGCCGATT TGATGCAAGAAGTTGCGGTTGAGACATTCGGTGCTATGGCCAAGACTGAAAAAATTGCCTTCATACTCGAACAAGTGCGTTTATGTCTAGATAGGCAAGA TTATGTACGTGCTCAGATTCTTTCGAGGAGAATTAGCCCTAGGGTATTCGATGTCGATATTTCCAAAGAAAAAAAGAAGCCCAAGGAAGGAGATAACATC GTTGAAGAGGCTCCCGCTGATATTCCGTCCTTGTTGGAATTGAAGAGGATCTACTATGAACTTATGATCAGGTACTATTCCCATAACAATGACTACCTCG AGATTTGCCGTTGCTACAAGTCAATCTATGACATTCCTTCCGTGAAAGAAGATCCAGCTCAGTGGATACCGGTGCTGAGGAAGATCTGCTGGTACCTGGT ATTGGCACCACATGATCCAATGCAGTCAAGCCTTCTGAATTCAACTCTGGAGGACAGAAACCTCTCCGAGATTCCAAAGTTTAAGACGTTGTTGAAACAA GTGGTGACTATGGAGGTCATTCAATGGACTTCTCTATGGAACACATACAAGGAAGAGTTCGACAGCGAGAAGAACCTGCTGGGAGGATCGTTAGTTGATA AAGCGGCTGAAGACTTGCAGCAGAGAATAATTGAACACAACATCCTCGTCGTGTCAAAGTACTACGCTAGGATCACTGTAGGGAGACTGTCGGAGCTTTT GTGCCTTGGCATTGTGGAGACGGAGAAGCACTTATCAGAGATGGTGGTCTCCAAGGCTTTAATAGCCAAAGTCGATAGGCCAACAGGAGTCGTGAGCTTC CAAGTTGCAAAAGACTCGAACGACATCCTCAACTTGTGGTCTTCCAACCTTGAGAAGCTGCTGGAGCTAGTCGAGAAGAGCTGCCACCAGATCCATAAGG AGACAATGGTGCATAAAGCAGCCTTGAAATGA
AA sequence Show only first row Show all	>Lus10005804 pacid=23174746 polypeptide=Lus10005804 locus=Lus10005804.g ID=Lus10005804.BGIv1.0 annot-version=v1.0 MFKDGKASLEAAIERLQNAEKQARLAGDVAETRKAVTEILQLCFDAKDWKALNDQILLLSKKRGQLKQAVTAMVQQAMQYIDQTPDVETRIELIQTLNNV SAGKIYVEIERARLVKRLAKIKEQQGLVAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRRISPRVFDVDISKEKKKPKEGDNI VEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKSIYDIPSVKEDPAQWIPVLRKICWYLVLAPHDPMQSSLLNSTLEDRNLSEIPKFKTLLKQ VVTMEVIQWTSLWNTYKEEFDSEKNLLGGSLVDKAAEDLQQRIIEHNILVVSKYYARITVGRLSELLCLGIVETEKHLSEMVVSKALIAKVDRPTGVVSF QVAKDSNDILNLWSSNLEKLLELVEKSCHQIHKETMVHKAALK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10005804 [exp]	0	1
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	1.4	0.9522
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	5.7	0.9205
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	6.5	0.9094
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	8.1	0.9325
AT2G44660			ALG6, ALG8 glycosyltransferase...		Lus10019495 [exp]	10.5	0.9028
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10025174 [exp]	11.7	0.8482
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	12.5	0.9126
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	17.6	0.9116
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10014964 [exp]	18.3	0.8865
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	23.6	0.9072

Compare expression of checked genes

Lus10005804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.