Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27990 101 / 4e-27 Pre-rRNA-processing protein TSR2, conserved region (.1) AT3G22510 82 / 4e-20 Pre-rRNA-processing protein TSR2, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006795 [exp] 301 / 3e-105 AT5G27990 107 / 2e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10027901 [exp] 119 / 2e-33 AT5G27990 79 / 3e-18 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10002404 [exp] 117 / 5e-33 AT5G27990 77 / 1e-17 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006124 [exp] 88 / 5e-20 AT3G22520 340 / 4e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035000 [exp] 193 / 1e-62 AT5G27990 126 / 1e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.005G047901 [exp] 178 / 2e-56 AT5G27990 124 / 7e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.010G086800 [exp] 115 / 7e-33 AT3G22510 98 / 2e-27 Pre-rRNA-processing protein TSR2, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10273 [flax] [poplar] WGG Pre-rRNA-processing protein TSR2
Representative CDS sequence Show only first row Show all	>Lus10005806 pacid=23174709 polypeptide=Lus10005806 locus=Lus10005806.g ID=Lus10005806.BGIv1.0 annot-version=v1.0 ATGAACGGCGGAGGAGACGCCGATAGCAGCTCAATCAAGCAGCTGACCTCCGAGGCACTTCCCGTGCTCAACGAAGGCATCTATTTGCTTCTCTCCAGAT GGTCAGCTCTTCAGCTCGCAATCGAGAACGAGTGGGCCGGCCGCCGCTCCCGCCAGCTGGCCGATCAGTTCGCTGCCGATATCTTCGCCTGGTTCACTCA ACCCAAAGCCGAACCGCTGTATATCGATGATCTAGAGAGCGTTTTAGACGAAGGGATGCTTACTTTCAACGTCGATGTTGACGATGGCAGCGTTGAGGAG GTAGCTGAGAAATTGATGATTATGCATGAGGAATGTTTGGAAGGTAACTATAGATCCGTTGAGAAGTTGAGAACAGCAGGGCCTGGAGCAGGAATTCATC AGCATCAAAGAGAGGCTGGAAATGACGATGAATCCTCGTCGGAGGACGATGACAGTGACAAAGAAGGAGGTAGATCAAGTATGCTGGTGGATCAACCAGT TTCTCAGCCAAGGTCGAGTTCAGTGGTCGAGCCGGAGTGTAATGAAGCTCTGGGAGATGATGATGGGTGGACAGTCGTCTTGTCCAGTCGAAGCAAAGGC AGAAGGAAGTAG
AA sequence Show only first row Show all	>Lus10005806 pacid=23174709 polypeptide=Lus10005806 locus=Lus10005806.g ID=Lus10005806.BGIv1.0 annot-version=v1.0 MNGGGDADSSSIKQLTSEALPVLNEGIYLLLSRWSALQLAIENEWAGRRSRQLADQFAADIFAWFTQPKAEPLYIDDLESVLDEGMLTFNVDVDDGSVEE VAEKLMIMHEECLEGNYRSVEKLRTAGPGAGIHQHQREAGNDDESSSEDDDSDKEGGRSSMLVDQPVSQPRSSSVVEPECNEALGDDDGWTVVLSSRSKG RRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27990			Pre-rRNA-processing protein TS...		Lus10005806 [exp]	0	1
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	3.0	0.8158
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	8.8	0.7985
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	9.5	0.8012
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	11.2	0.8347
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	11.5	0.8239
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	17.3	0.7882
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	19.7	0.8134
AT1G10020			Protein of unknown function (D...		Lus10032807 [exp]	22.0	0.7657
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	22.7	0.7798
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10034022 [exp]	24.2	0.7728

Compare expression of checked genes

Lus10005806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.