Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44670 58 / 5e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 57 / 7e-09 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44480 56 / 2e-08 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 54 / 1e-07 TAO1 target of AVRB operation1 (.1) AT3G44630 52 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G14460 49 / 4e-06 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G56510 47 / 1e-05 ADR2, WRR4 WHITE RUST RESISTANCE 4, ACTIVATED DISEASE RESISTANCE 2, Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G11250 45 / 4e-05 Disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44400 45 / 5e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G04220 45 / 7e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006793 [exp] 435 / 3e-149 AT3G14460 127 / 4e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011278 [exp] 131 / 7e-34 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10008584 [exp] 86 / 2e-18 AT3G14470 186 / 2e-49 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 76 / 5e-15 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 74 / 3e-14 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 63 / 1e-10 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 62 / 2e-10 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10002737 [exp] 61 / 4e-10 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 61 / 5e-10 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G271800 [exp] 110 / 9e-27 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 101 / 1e-23 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 100 / 3e-23 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 89 / 2e-19 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 74 / 1e-14 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 74 / 2e-14 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 74 / 3e-14 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 72 / 7e-14 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136400 [exp] 72 / 7e-14 AT3G14470 413 / 5e-128 NB-ARC domain-containing disease resistance protein (.1) Potri.017G133666 [exp] 71 / 2e-13 AT3G14470 416 / 7e-129 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005807 pacid=23174728 polypeptide=Lus10005807 locus=Lus10005807.g ID=Lus10005807.BGIv1.0 annot-version=v1.0 ATGCCCGCTTTCCCGATTGTCGAAGGTGACCTGGAGTTGATCAGAGCCAGCTTGAAACCATTAGCAAGGACGATGAAGATGACGACAAAGATGATGACGA TAGGACCACTCTCTAAGGTGACCAAGTTGACATTACAAGAAACTGACGACGACCTCGAGCTTTTACCTGATGATGATGGTAATTTCAGTGGTTTCATCTC TCTTCAAGAGCTGTTTCTGAAGGATTGTTGTAGAGGTGTGAAGGTACCTAGCTCATTGTGTTGCAGCACGAGCTTAACCGCAATCCATATATACAGATGC GAGATGGTAATGTACCTGCCGCCATTACATACACTCCCGTCTTTAACACAGCTGAAACTCGAGGATTGCCCGAAGCTGAAGGGATGTTGGCATGAAAATG AAGATAAGGCAGAGGAGCACTGGCCGCATTTCTCTCTTCTATTGAGTTTGAAATTATCGGCTTGCCCAAACCTTACGCAGTTGCCTCTTTTTCCGACAGT CGAAGGCGATTTGCAGCAGTGGCGGGTGAGTGCGCAAGTGCTATGCCCGACGATGATCATGAAGAAAGCAGCTATGATCACTCCTCTATCCAGGTTGACA CACCTGACTATATGGGATATTGTCGACCTGGAATCTCTCCCGGAACAAGGTCTTTACACTCTAACTTCGCTTACGGAGTTGGTGATCATGAGCTGTCCGA AACTGGCGTCTCTGCCTCCAGCAATGCGACACCTTACTTCGTTACGGACCCTGGCGATTCTATCGTGTCCGCATTTGAAAGAACGGTGTAGAATGGGAGA AGGTGAAGATTGGCGAACATTTCTCACATTCCGAAGATTATACTCGACCGGGAGATACTCCAGGATTCAGGTAGCGGGTCGGAGGCAAGCCTCTTGGATG ATCCGTTGGTGA
AA sequence Show only first row Show all	>Lus10005807 pacid=23174728 polypeptide=Lus10005807 locus=Lus10005807.g ID=Lus10005807.BGIv1.0 annot-version=v1.0 MPAFPIVEGDLELIRASLKPLARTMKMTTKMMTIGPLSKVTKLTLQETDDDLELLPDDDGNFSGFISLQELFLKDCCRGVKVPSSLCCSTSLTAIHIYRC EMVMYLPPLHTLPSLTQLKLEDCPKLKGCWHENEDKAEEHWPHFSLLLSLKLSACPNLTQLPLFPTVEGDLQQWRVSAQVLCPTMIMKKAAMITPLSRLT HLTIWDIVDLESLPEQGLYTLTSLTELVIMSCPKLASLPPAMRHLTSLRTLAILSCPHLKERCRMGEGEDWRTFLTFRRLYSTGRYSRIQVAGRRQASWM IRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10005807 [exp]	0	1
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	6.9	0.8080
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	14.3	0.7701
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	14.5	0.7874
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10000057 [exp]	16.7	0.7945
AT2G38570			unknown protein		Lus10014180 [exp]	22.5	0.8049
					Lus10030382 [exp]	24.0	0.7305
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	25.0	0.7451
AT2G14045			unknown protein		Lus10022007 [exp]	26.9	0.7317
AT1G27060			Regulator of chromosome conden...		Lus10036707 [exp]	30.0	0.6993
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	33.6	0.7876

Compare expression of checked genes

Lus10005807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.