Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17940 56 / 2e-09 Galactose mutarotase-like superfamily protein (.1) AT1G25275 48 / 9e-08 unknown protein AT5G15140 42 / 0.0001 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006792 [exp] 107 / 4e-31 AT1G25275 60 / 6e-14 unknown protein Lus10010976 [exp] 69 / 6e-14 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 68 / 8e-14 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10004192 [exp] 54 / 6e-10 AT1G25275 39 / 5e-05 unknown protein Lus10026181 [exp] 54 / 9e-09 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10006793 [exp] 41 / 0.0002 AT3G14460 127 / 4e-30 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G116800 [exp] 76 / 1e-18 AT1G25275 53 / 5e-11 unknown protein Potri.015G114500 [exp] 69 / 5e-16 AT1G25275 59 / 2e-13 unknown protein Potri.017G129300 [exp] 62 / 1e-11 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 56 / 1e-09 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10005808 pacid=23174736 polypeptide=Lus10005808 locus=Lus10005808.g ID=Lus10005808.BGIv1.0 annot-version=v1.0 ATGGAGAAATTGAGCAAGTTGATGGTGGTGATGTTCTTGATAAGCCTGGTGTTGAGTTGCAGTAGTAATATGGTGGAGGCTGATGCATCCGATTGCTATG ATGCTTGTACTACAGGCTGCGTCCAGCCCAACACAAGACTGATGAGGAGGTGCGAGCTTAAATGCGGGATCAGATGCAATTCAGCTGCTGCTTCTTCTTC TTCTGCAGGATACCTGGGAGATGTAACCGTGACTGCAACTTACACACTGACATCAAGCAACACAGTGAGGCTGGATATGGAAGCAGTTCCCAAGGACAAG TCAACACCGGTCAGTGATTCAGGTGTGGCTGCTCTGACTTGCGCGAGTGTTGACAAGGAAAGCAACGGTGAAGATTCGTGTTCTGCTCTTGTCGATCCTC TCTCGAAATTGATACACTTGATGATTCTATGGGAAATTTCCGACTTGGGATCGCTACCAAGACAATGCCTCTGCGACCTCACTGGTCTGAGTTTACGGAA TAGATGGAATGGAACAAATTAG
AA sequence Show only first row Show all	>Lus10005808 pacid=23174736 polypeptide=Lus10005808 locus=Lus10005808.g ID=Lus10005808.BGIv1.0 annot-version=v1.0 MEKLSKLMVVMFLISLVLSCSSNMVEADASDCYDACTTGCVQPNTRLMRRCELKCGIRCNSAAASSSSAGYLGDVTVTATYTLTSSNTVRLDMEAVPKDK STPVSDSGVAALTCASVDKESNGEDSCSALVDPLSKLIHLMILWEISDLGSLPRQCLCDLTGLSLRNRWNGTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17940			Galactose mutarotase-like supe...		Lus10005808 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10036343 [exp]	9.2	0.9541
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	9.8	0.9585
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	15.2	0.9094
AT4G21920			unknown protein		Lus10006774 [exp]	15.3	0.9310
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	19.7	0.9580
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10032885 [exp]	23.0	0.9540
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	24.4	0.9558
AT2G18210			unknown protein		Lus10028324 [exp]	24.5	0.9517
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	24.9	0.9229
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	25.0	0.9497

Compare expression of checked genes

Lus10005808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.