Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37710 110 / 8e-29 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 109 / 2e-28 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 96 / 1e-23 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010983 [exp] 122 / 2e-34 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 121 / 6e-34 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10039240 [exp] 99 / 1e-24 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 99 / 2e-24 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 96 / 2e-23 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 82 / 1e-18 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130000 [exp] 113 / 6e-30 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 112 / 1e-29 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G142700 [exp] 107 / 8e-28 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 97 / 4e-24 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G145900 [exp] 96 / 2e-23 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G159200 [exp] 93 / 2e-22 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005809 pacid=23174723 polypeptide=Lus10005809 locus=Lus10005809.g ID=Lus10005809.BGIv1.0 annot-version=v1.0 ATGATGGAAATAGCCATTATGTTGCTTTTGATACAGGATGATTTCCTGCCAAGAACTCCGACTCCGTTGGAAGATATTTTCAAGTCAATCTTCTGCTTGC CTTGCCTGCTGTTTTTGGTCTGCTTGAGGGATACATTCATCCCAGAAGACTGTACGCTCCAGGGAGAATCTATCACATCGTCGAGCGGTGAAATTCTGCA GGTGTGGGAGGTTCCACCTGAGATTAGAACCGCCATTCCGGTAGATGGAAGATTAGAACACATCATGCTATCGTGCAATGCCACTTCGGATCACGCAATC ATCTGGATCGAACAGAAACAGAGAAGGAAGAAATCGGCGGGCTCTGAAAGCACAGAAAATGGAGAGGATTCAGACACTGGAAATGGAGCACAAAGACGCA CTGGAAAGAGCAGTGAGCTTGAATACCGCACGCTACAAAGACAGATAGCTATCAGAAGGTCGTGGAGTTTTGTTCATTTGACGATAGAGGTTGTTGTATT GCCTTTCTGA
AA sequence Show only first row Show all	>Lus10005809 pacid=23174723 polypeptide=Lus10005809 locus=Lus10005809.g ID=Lus10005809.BGIv1.0 annot-version=v1.0 MMEIAIMLLLIQDDFLPRTPTPLEDIFKSIFCLPCLLFLVCLRDTFIPEDCTLQGESITSSSGEILQVWEVPPEIRTAIPVDGRLEHIMLSCNATSDHAI IWIEQKQRRKKSAGSESTENGEDSDTGNGAQRRTGKSSELEYRTLQRQIAIRRSWSFVHLTIEVVVLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10005809 [exp]	0	1
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	4.8	0.9641
					Lus10019410 [exp]	6.2	0.9529
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	7.3	0.9588
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10003530 [exp]	9.4	0.9443
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	12.6	0.9520
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	13.4	0.9504
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	14.3	0.9528
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	15.0	0.9493
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	17.9	0.9453
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	18.3	0.9403

Compare expression of checked genes

Lus10005809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.