Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64660 400 / 9e-138 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT5G09800 392 / 8e-135 ARM repeat superfamily protein (.1) AT3G18710 383 / 4e-131 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G65920 135 / 3e-35 ARM repeat superfamily protein (.1) AT1G66160 122 / 8e-31 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G49810 120 / 4e-30 ARM repeat superfamily protein (.1) AT2G35930 118 / 2e-29 PUB23 plant U-box 23 (.1) AT3G19380 115 / 3e-28 PUB25 plant U-box 25 (.1) AT3G46510 110 / 5e-26 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G37490 108 / 6e-26 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006791 [exp] 540 / 0 AT5G09800 270 / 1e-88 ARM repeat superfamily protein (.1) Lus10042798 [exp] 287 / 2e-93 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10029771 [exp] 284 / 2e-92 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10010598 [exp] 131 / 4e-34 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10021267 [exp] 116 / 1e-28 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016166 [exp] 115 / 2e-28 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 114 / 5e-28 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10037970 [exp] 114 / 4e-27 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10029395 [exp] 111 / 8e-27 AT3G11840 296 / 8e-96 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110600 [exp] 464 / 4e-163 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.005G057500 [exp] 451 / 1e-157 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.005G189800 [exp] 322 / 4e-107 AT3G18710 260 / 4e-83 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.002G070500 [exp] 320 / 1e-106 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.004G083900 [exp] 145 / 3e-39 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 145 / 6e-39 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 142 / 3e-38 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.010G103100 [exp] 142 / 8e-38 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.012G042600 [exp] 138 / 2e-36 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.006G202600 [exp] 137 / 2e-36 AT3G52450 511 / 0.0 plant U-box 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10005810 pacid=23174725 polypeptide=Lus10005810 locus=Lus10005810.g ID=Lus10005810.BGIv1.0 annot-version=v1.0 ATGGTGAGGGACGATCTCTACATAACGATACCAACCTTCTTCCGCTGCCCAATCTCCCTCGACGTGATGAAATCCCCTGTCAGCCTCTCCACCGGCGTCA CCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACGGCGGCAATAATACTTGTCCGGCGACGATGCAGGTCCTCGAGTCCAAAGAATTCGTTCCCAACCA CAACCTCCAGCGCCTCATCCGCATCTGGTCCGACTCCCTCCGCGATCGCCGTCAGGGTCCGCCGCCGCCTCCGTCGGCGCCGGAGCTGGCGGTGAAGGAC ATTGATAGCAAGGAGTCCATACGGAGGTCGATGTCGAAGATCGTTTCTTTCGCGGAGGAATCGGAGGAGAATAGGGTCTTTCTGGCTAAGGCGGATGGGT TCTTGGAGAGGATTGCGGATCTGGTGGTGTGCACGGACGATACCGGCAGTGATTTGGATTCGGCGGAGGTGGCGGTTAGGATTTTGGATTTGGTGAAGGA TGGATTTGGGGATTATGAGAAATTTAAAGGATTGTTGATTAATTCGAATTGTTTGCCGTCGATGGTTTTAGTTCTGAAACAGGGGAGCCGGTTGGATTCA CGAATCGGATCGGTACGGATCCTCCAATCAATCGCGGTAGACACCGAGTCGAAGTTGTTGATAGCGGAAAGCGACGGATTACTATCCCAATTGGTGAATT CAATCGGATTGGAGAACGATTCAGCACTAATGGAAGCTACCCTTTCGTGTTTAATATCAATCTCAACTCCGAAGCGGGTGAAATCGAAGCTCGTCGAACT GAAAACAATAGAGAAGCTCCGCGACATACTCCGGCAGCCAGAGGCCACCATCTCAACGACGGAGAAGGCGCTTAAGCTGCTGGAATCGGTGTCGTCGTGC CGGGAAGGGAGGGCAGAGCTCTCTGGTGACACGGTGTGCGTGGAGGCGGTGGTGAGGAAGGCGATGAAGGTGTCCGAGGCGGCGACGGAGGTCGCCGTGA CGATACTGTGGAGTATGTGTTACCTGTTCAGGGACCAGCGGACGGCGGAGGCGGTGGTGAGGAGTAATGGGTTGACGAGGATCCTGCTTTTGATGCAGAG CAACTGCTCGCCGGCGGTGAGGCAGATGTCGACTGATATGCTGAGGATTTTCCGGGTGAATTCCAAGTCGTGCCTTTCGAGTTACGACACGAAAACGACC CACATTATGCCGTTTTGA
AA sequence Show only first row Show all	>Lus10005810 pacid=23174725 polypeptide=Lus10005810 locus=Lus10005810.g ID=Lus10005810.BGIv1.0 annot-version=v1.0 MVRDDLYITIPTFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDGGNNTCPATMQVLESKEFVPNHNLQRLIRIWSDSLRDRRQGPPPPPSAPELAVKD IDSKESIRRSMSKIVSFAEESEENRVFLAKADGFLERIADLVVCTDDTGSDLDSAEVAVRILDLVKDGFGDYEKFKGLLINSNCLPSMVLVLKQGSRLDS RIGSVRILQSIAVDTESKLLIAESDGLLSQLVNSIGLENDSALMEATLSCLISISTPKRVKSKLVELKTIEKLRDILRQPEATISTTEKALKLLESVSSC REGRAELSGDTVCVEAVVRKAMKVSEAATEVAVTILWSMCYLFRDQRTAEAVVRSNGLTRILLLMQSNCSPAVRQMSTDMLRIFRVNSKSCLSSYDTKTT HIMPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64660		ATCMPG2	"CYS, MET, PRO, and GLY protei...		Lus10005810 [exp]	0	1
AT2G45600			alpha/beta-Hydrolases superfam...		Lus10009308 [exp]	1.4	0.8319
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	3.0	0.8968
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	11.0	0.7750
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	13.3	0.7954
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	16.1	0.7602
AT2G37035			unknown protein		Lus10013807 [exp]	18.7	0.7310
AT2G34250			SecY protein transport family ...		Lus10007313 [exp]	25.0	0.7307
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10015922 [exp]	30.7	0.7191
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10009422 [exp]	35.2	0.7673
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	36.3	0.7159

Compare expression of checked genes

Lus10005810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.