Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18770 244 / 3e-73 Autophagy-related protein 13 (.1) AT3G49590 155 / 1e-40 ATG13 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006790 [exp] 746 / 0 AT3G18770 380 / 3e-125 Autophagy-related protein 13 (.1) Lus10019097 [exp] 170 / 8e-46 AT3G49590 466 / 4e-158 autophagy-related 13, Autophagy-related protein 13 (.1.2.3) Lus10034457 [exp] 159 / 4e-42 AT3G49590 460 / 1e-155 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010700 [exp] 366 / 6e-120 AT3G18770 380 / 3e-124 Autophagy-related protein 13 (.1) Potri.001G309800 [exp] 365 / 5e-119 AT3G18770 434 / 2e-144 Autophagy-related protein 13 (.1) Potri.012G004400 [exp] 186 / 2e-51 AT3G49590 402 / 9e-133 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [flax] [poplar] Mad2 PF10033 [flax] [poplar] ATG13 Autophagy-related protein 13
Representative CDS sequence Show only first row Show all	>Lus10005812 pacid=23174749 polypeptide=Lus10005812 locus=Lus10005812.g ID=Lus10005812.BGIv1.0 annot-version=v1.0 ATGGAGCAGGTCATCACCGAGTTTTTTGCCAAGAGCCTCCACATCATACTCGAGTCGAGGTCACCTTTCATGTCATCTCGCAACTTCAGCGGAGAGCAGA CTGTGGCATCGTCTCCATGTTCGTCTTCATCCTCCTCCTCGAGCGTCAGGCCAAGGGACAAATGGTTCAATCTAGCTCTAGGAGAGTGCCCCGCTGCACT GGAGAATCTCGACCTTTGGAGGCAGAGTAATCTCGATCCCCTAGTGGTCGATGTGATATTGGCGAAAAAGGACAATGCTTTCAGTTCTGATCAGGAAGAG CTCTTGTCTGGAGGTATAAGTGAGAAGGTTATAGAGAGGTGGGTGGTACAGTACGACACTAGGAAGCTGAGGGAATCTAATTCGGGGAGTAGGAGATCGA GCAGCAATGTACTGCATTCGCTGTACAAGAAGTCGATAATGCTCCTGAGGTCTTTGTATGTTACTGCTAGGCTTTTACCTGCATACAAGATCTTCCGCGA CCTGAATTCGTCTGGACTGCTACGACCGTTTACTCTTACTCATAGGGTATCCTCTTTCATCACTCGTAGAGAAGAAGAGACTGATATGCAGCGGTTTAGC TTCACCCCTGTTGAGACTTCCTCCGGAAGGCTTTGCCTTTCCGTGGTGTATCATTCTTCAGTATCGGATGCAAGCTCCGAATCTTCCACACCAATGTCTC CTCAGTTTCTTCCGGATTATGTCGGAAGTCCATTGGCTGATCCACTTAAAAGGTTCACTTCCCTTCCAGTATCTCACGGTTCCCCATCGTCTTCACCCTT TTCCAGAAGGCATAGCTGGAGTTATGACCGGAATCGGTTTTCGGTTTACAAAACCGGTTCTGGTTATGATGAGTATTATCCTTCTCCGAACTTTACACCA TCACCATCGCCATCGCCACCAATCCACATGCCTGGAAATGACAACCTTTGGCGAACCGAAAGTGCACCTGTTAGCATACCTAGGCCGTCAAACAAGTGCC CTCTACTGCCATCAACTAACCCTAAGACAGATGCAAGTTCAGGTTTGCTTCACATTGGTGTGTCAGTTGAAAAGGTGATACATAAAGATGACAACTTTAA AACAAAGCTTCTGGGGACGAATTCGTTCTCTAGAAGCTCCAGCAAGTCTTTCCATGATGACTTTGATGACCTCGATTTTCCTTGTCATTTCGATGTCGAG AGCGATGATGTAACCGATCACGGTAGCAGGCCTGAATCTTTCGATCAGAAATCTAATCTCTTGAACCAACTCGAACCGGGTGGAGGAACCGCCTTCCCGG TCAGGAAATCCCAGGACGCTGCAGTGGGTGCCCTAGTCCGTATGCTGAAGAAAGCTCCGCCTCTTCGCCAGGAACTCTCCTCTAACATGGCCGATTCGAG TCAAGACTCTGCCAAGTCCAAGCTGCGGGCCAGCACCACTCTATCAGAACAGCAGACTGATGATACTTCTTCGTCAAGTATCGCATCGTCTGGCCTCGCT GCATCGAAGACAACAGCCGATGCTTTGGAAGAGCTGCGCGGGTACAAGCGAATGAAGGACTTCTTGCTGAGCCAAGGCGTTTGA
AA sequence Show only first row Show all	>Lus10005812 pacid=23174749 polypeptide=Lus10005812 locus=Lus10005812.g ID=Lus10005812.BGIv1.0 annot-version=v1.0 MEQVITEFFAKSLHIILESRSPFMSSRNFSGEQTVASSPCSSSSSSSSVRPRDKWFNLALGECPAALENLDLWRQSNLDPLVVDVILAKKDNAFSSDQEE LLSGGISEKVIERWVVQYDTRKLRESNSGSRRSSSNVLHSLYKKSIMLLRSLYVTARLLPAYKIFRDLNSSGLLRPFTLTHRVSSFITRREEETDMQRFS FTPVETSSGRLCLSVVYHSSVSDASSESSTPMSPQFLPDYVGSPLADPLKRFTSLPVSHGSPSSSPFSRRHSWSYDRNRFSVYKTGSGYDEYYPSPNFTP SPSPSPPIHMPGNDNLWRTESAPVSIPRPSNKCPLLPSTNPKTDASSGLLHIGVSVEKVIHKDDNFKTKLLGTNSFSRSSSKSFHDDFDDLDFPCHFDVE SDDVTDHGSRPESFDQKSNLLNQLEPGGGTAFPVRKSQDAAVGALVRMLKKAPPLRQELSSNMADSSQDSAKSKLRASTTLSEQQTDDTSSSSIASSGLA ASKTTADALEELRGYKRMKDFLLSQGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18770			Autophagy-related protein 13 (...		Lus10005812 [exp]	0	1
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	1.4	0.8472
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	2.4	0.8250
AT3G18770			Autophagy-related protein 13 (...		Lus10006790 [exp]	3.5	0.8162
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	6.0	0.8432
AT4G15545			unknown protein		Lus10034001 [exp]	9.5	0.8139
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	10.6	0.8108
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	11.6	0.7980
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	14.7	0.8014
					Lus10010597 [exp]	14.9	0.7960
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	15.9	0.8016

Compare expression of checked genes

Lus10005812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.