Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 177 / 8e-56 RING/U-box superfamily protein (.1) AT1G49220 152 / 2e-45 RING/U-box superfamily protein (.1) AT1G49200 145 / 3e-43 RING/U-box superfamily protein (.1) AT1G49210 144 / 6e-43 RING/U-box superfamily protein (.1) AT3G18773 135 / 1e-39 RING/U-box superfamily protein (.1) AT5G05280 117 / 6e-33 RING/U-box superfamily protein (.1) AT3G10910 112 / 6e-31 RING/U-box superfamily protein (.1) AT5G01880 110 / 3e-30 RING/U-box superfamily protein (.1) AT1G20823 105 / 6e-28 RING/U-box superfamily protein (.1) AT1G76410 103 / 1e-27 ATL8 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006788 [exp] 325 / 3e-114 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 224 / 8e-74 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10005815 [exp] 209 / 3e-68 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006785 [exp] 208 / 8e-68 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10020859 [exp] 202 / 4e-65 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10033515 [exp] 199 / 6e-64 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10006786 [exp] 189 / 1e-60 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005816 [exp] 185 / 3e-59 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10005818 [exp] 179 / 3e-57 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 183 / 4e-58 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 181 / 2e-57 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 155 / 3e-47 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 151 / 7e-46 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 133 / 6e-39 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 122 / 7e-35 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 121 / 2e-34 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 112 / 9e-31 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 108 / 1e-29 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 107 / 4e-29 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005814 pacid=23174735 polypeptide=Lus10005814 locus=Lus10005814.g ID=Lus10005814.BGIv1.0 annot-version=v1.0 ATGCCTAGAAGACTCCTCCTCCTCAACTCCTCCCCTTCTCCGGCGGCCGCCACCTCACCGGACAGCAAATTCGACGCCAACGTGGTGATGGTCCTCGCCG TCCTCCTCTGCGCCCTGATATGCTCTCTGGGTCTCAACTCGATAATCCGGTGCGCTCTACGGTGCTCCCACTTGGTACCCTCCGGTGTTGCCGCGGACCA ACTTTCCACCGTCTCCGGCGCTGCCGCCGCGGCCAGGCTGGCCAACACCGGGGTCAAGAAGAAGGCCCTCAAGACCTTCCCCGTCGTCACCTTCTCCGAC GACAATGGATTGAACTTGGACGCCGAGTGCGTCATCTGCCTGTCGGAGTTTGCCGCCGGCGACCGGGTCAAGATCCTCCCCAAGTGTAACCACGGCTTCC ACGTCAGGTGTATCGACAAATGGCTAGGGTCCCACTCTTCTTGCCCGACTTGCCGCCACTGCCTCATTGAGACTTGCCGGAAAATTATCGGCGAGGATAC CCTAGCTCCGGTGGTGGCAGTTTCCGGCGACGATTCTCCATCTTCTTCTAATGCTGCTCAGATGACGTCAGATTTTGCTCCGGCGGAAGGGATTGTTATT AATATGCCGCCGATGGAAGGCGAAGGTCCGGTGAGGGAACACAGAATCGTCAAGAGTGTGTTATTTTAG
AA sequence Show only first row Show all	>Lus10005814 pacid=23174735 polypeptide=Lus10005814 locus=Lus10005814.g ID=Lus10005814.BGIv1.0 annot-version=v1.0 MPRRLLLLNSSPSPAAATSPDSKFDANVVMVLAVLLCALICSLGLNSIIRCALRCSHLVPSGVAADQLSTVSGAAAAARLANTGVKKKALKTFPVVTFSD DNGLNLDAECVICLSEFAAGDRVKILPKCNHGFHVRCIDKWLGSHSSCPTCRHCLIETCRKIIGEDTLAPVVAVSGDDSPSSSNAAQMTSDFAPAEGIVI NMPPMEGEGPVREHRIVKSVLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	6.2	0.8028
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	6.8	0.8042
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	8.4	0.8040
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	13.2	0.7879
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	13.4	0.7992
					Lus10031119 [exp]	13.8	0.6068
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	15.4	0.7733
					Lus10000348 [exp]	18.2	0.7676
AT3G18150			RNI-like superfamily protein (...		Lus10014141 [exp]	19.0	0.7620
					Lus10036703 [exp]	20.3	0.7877

Compare expression of checked genes

Lus10005814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.