Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 133 / 9e-39 RING/U-box superfamily protein (.1) AT1G20823 113 / 3e-31 RING/U-box superfamily protein (.1) AT1G49220 112 / 2e-30 RING/U-box superfamily protein (.1) AT1G49210 111 / 4e-30 RING/U-box superfamily protein (.1) AT5G05280 108 / 9e-30 RING/U-box superfamily protein (.1) AT3G18773 109 / 1e-29 RING/U-box superfamily protein (.1) AT1G49200 108 / 7e-29 RING/U-box superfamily protein (.1) AT1G76410 104 / 6e-28 ATL8 RING/U-box superfamily protein (.1) AT5G01880 101 / 4e-27 RING/U-box superfamily protein (.1) AT3G10910 97 / 5e-25 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006787 [exp] 232 / 2e-77 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10006788 [exp] 215 / 9e-71 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 209 / 2e-68 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005816 [exp] 204 / 1e-66 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006786 [exp] 196 / 9e-64 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005818 [exp] 166 / 4e-52 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1) Lus10033515 [exp] 166 / 2e-51 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10005817 [exp] 161 / 2e-49 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10020859 [exp] 159 / 4e-48 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 154 / 5e-47 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 148 / 2e-44 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 146 / 6e-44 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 140 / 2e-41 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 118 / 4e-33 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 114 / 1e-31 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 113 / 3e-31 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 111 / 3e-30 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 109 / 1e-29 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 102 / 3e-27 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005815 pacid=23174714 polypeptide=Lus10005815 locus=Lus10005815.g ID=Lus10005815.BGIv1.0 annot-version=v1.0 ATGGATTCAACCACTAGTCAAATTTTACTCCAAACCCCCACCATCGCCGGCAGAAGACTCCTCCTCAACTCCTCCCCACCTACCGCGGCCCTCGCTGAGC CAGAAAGCAAATCCGACTCCAAGGTGGTGATGGTGGTCTCGGTACTCCTCTGTGCCATGATCGTGTCTCTCATTCTCAACTCGATCATCCGCTGCGCATT GAGATGCTTCTACTCCGAACCCACTTCCACTGGCACCGGAGCTCCGGCGACGGCGAAGTTAGCCAATACTGGAATTAAAAAGAAGGCCCTCAATACTTTC CCTGTTGTCACCTTCTCGGCCGAGTCTGGTGAGAGGTTAAATTTGGATGCCGAGTGTGTCATCTGCTTGTCGGAGTTTTCCGCCGGCGACTTGATCAAGG TCCTGCCAACGTGTAACCATAGATTCCACGTCAAGTGTATTGATCAGTGGCTTGGATCCCACTCTTCCTGCCCCACTTGCCGTCACTGCCTCATCAAGAC CCGCCGGAATGATTCTGGCAGTGAAGCTGTCGGGCCATCGGCGGTGGTGGCTCCGGCAGAAGATGCTGTTGTTGTTAGTATGCCGCCGTTGGAAGCGGAA GGTCCGGTACGGGAACATCGGATGATTAAGAGTGTGTTCTTTTGGAGGAAAAATTAA
AA sequence Show only first row Show all	>Lus10005815 pacid=23174714 polypeptide=Lus10005815 locus=Lus10005815.g ID=Lus10005815.BGIv1.0 annot-version=v1.0 MDSTTSQILLQTPTIAGRRLLLNSSPPTAALAEPESKSDSKVVMVVSVLLCAMIVSLILNSIIRCALRCFYSEPTSTGTGAPATAKLANTGIKKKALNTF PVVTFSAESGERLNLDAECVICLSEFSAGDLIKVLPTCNHRFHVKCIDQWLGSHSSCPTCRHCLIKTRRNDSGSEAVGPSAVVAPAEDAVVVSMPPLEAE GPVREHRMIKSVFFWRKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	0	1
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	4.0	0.8587
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	4.2	0.8520
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	5.3	0.8262
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	5.9	0.8095
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10012245 [exp]	6.0	0.7860
					Lus10015658 [exp]	6.5	0.8539
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	10.7	0.8190
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	15.8	0.7878
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	16.4	0.7732
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	16.4	0.7920

Compare expression of checked genes

Lus10005815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.