Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 129 / 1e-37 RING/U-box superfamily protein (.1) AT1G49210 110 / 6e-30 RING/U-box superfamily protein (.1) AT1G49200 109 / 1e-29 RING/U-box superfamily protein (.1) AT1G49220 107 / 2e-28 RING/U-box superfamily protein (.1) AT3G18773 102 / 4e-27 RING/U-box superfamily protein (.1) AT5G05280 101 / 4e-27 RING/U-box superfamily protein (.1) AT3G10910 101 / 5e-27 RING/U-box superfamily protein (.1) AT1G20823 97 / 2e-25 RING/U-box superfamily protein (.1) AT5G01880 94 / 2e-24 RING/U-box superfamily protein (.1) AT1G76410 94 / 5e-24 ATL8 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006786 [exp] 282 / 8e-98 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005815 [exp] 202 / 4e-66 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006788 [exp] 189 / 2e-60 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 186 / 2e-59 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006787 [exp] 159 / 4e-49 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10005818 [exp] 155 / 3e-48 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1) Lus10005817 [exp] 157 / 6e-48 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006785 [exp] 150 / 1e-45 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10033515 [exp] 143 / 2e-42 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010500 [exp] 139 / 2e-41 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 136 / 4e-40 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 119 / 2e-33 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 117 / 7e-33 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 117 / 8e-33 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 112 / 6e-31 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 103 / 2e-27 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 92 / 2e-23 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 92 / 2e-23 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 89 / 2e-22 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005816 pacid=23174717 polypeptide=Lus10005816 locus=Lus10005816.g ID=Lus10005816.BGIv1.0 annot-version=v1.0 ATGGATTCAACCACCGCCGCCGCCAGAAAACTCCTCCTCCTCCACAACTCCCCACCTCCGTCCACCGCCCCGGCCACAGTCACCAGCGAGTTCGACGCCA AGGTAGTGATGATCGTCTCAGTCGTCCTCTGCGCGTTGGTCGTCTCTCTGATTCTCAACTCAATCATCCGCTGCGCACTGGGATGCTCCCGATCTGTACC TGCCGCCGGCGACGACCAACTTTCGGGCGCCGGAGGTAGGGGAAAGTTGGCCAGTACCGGGATTAAAAAGAATGCCCTCAAGTCTTTCCCAGTCGTCGCC TTCTCCAAGCCGGGCGATGAAGGAATGGATTTGGATGCTGAGTGTGTCATCTGTTTGTCGGAGTTCGCCTCCGGCGACTTCGTTAAGGTCCTGCCGACGT GTAACCATGGGTTCCATGTCAAGTGCATTGATCAGTGGCTTGGGGATCATTCTTCTTGCCCCACTTGCCGTCACTGCCTTACCGGCGGTGAAGCTGTCTT GCCGGGGGCGGTGATTCCGGCGGGAGGTGTTGTAATTAGTATGCCGCCGGTGGAAGCGGAAGGTCCGATCCGGGAACGGAGAATGATCAATTGGGTCTTC TACTAG
AA sequence Show only first row Show all	>Lus10005816 pacid=23174717 polypeptide=Lus10005816 locus=Lus10005816.g ID=Lus10005816.BGIv1.0 annot-version=v1.0 MDSTTAAARKLLLLHNSPPPSTAPATVTSEFDAKVVMIVSVVLCALVVSLILNSIIRCALGCSRSVPAAGDDQLSGAGGRGKLASTGIKKNALKSFPVVA FSKPGDEGMDLDAECVICLSEFASGDFVKVLPTCNHGFHVKCIDQWLGDHSSCPTCRHCLTGGEAVLPGAVIPAGGVVISMPPVEAEGPIRERRMINWVF Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10005816 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	13.6	0.7512
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	17.1	0.8102
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	18.4	0.7988
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10043165 [exp]	41.5	0.7568
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	42.7	0.6769
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	43.5	0.7318
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	44.3	0.7683
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10004367 [exp]	47.5	0.7740
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	50.0	0.7700
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	93.4	0.7439

Compare expression of checked genes

Lus10005816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.