Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 184 / 4e-58 RING/U-box superfamily protein (.1) AT1G49210 152 / 9e-46 RING/U-box superfamily protein (.1) AT1G49220 151 / 6e-45 RING/U-box superfamily protein (.1) AT1G49200 148 / 3e-44 RING/U-box superfamily protein (.1) AT3G18773 141 / 1e-41 RING/U-box superfamily protein (.1) AT5G05280 137 / 2e-40 RING/U-box superfamily protein (.1) AT3G10910 129 / 3e-37 RING/U-box superfamily protein (.1) AT1G76410 119 / 2e-33 ATL8 RING/U-box superfamily protein (.1) AT1G20823 118 / 6e-33 RING/U-box superfamily protein (.1) AT5G01880 115 / 4e-32 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006788 [exp] 242 / 9e-81 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 236 / 2e-78 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006785 [exp] 233 / 2e-77 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10033515 [exp] 221 / 3e-72 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10020859 [exp] 216 / 3e-70 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10005815 [exp] 186 / 4e-59 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10005816 [exp] 176 / 3e-55 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006787 [exp] 175 / 1e-54 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10006786 [exp] 172 / 8e-54 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 204 / 6e-66 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 199 / 6e-64 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 176 / 2e-55 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 152 / 4e-46 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 150 / 4e-45 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 142 / 2e-42 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 139 / 5e-41 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 124 / 2e-35 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 124 / 2e-35 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 124 / 5e-35 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005817 pacid=23174707 polypeptide=Lus10005817 locus=Lus10005817.g ID=Lus10005817.BGIv1.0 annot-version=v1.0 ATGGCTAGAAGGCTCCTCCTCAACACCCCTACTCCGCCGGCGCCCGCGAGACCGACTCCTCCGGCATCCACCGATAGCACTTTCGATGCCAACGTGGTGA TGGTCCTCTCCGTCCTCCTCTGCGCCCTGATATGCTCTCTCGGTCTCAACTCAATAATTCGGTGCGCTCTACGATGCTCCCACTTGGTACCCGCCGGCGG CCAACTTTCCACCGCCTCCGGTGCTGCCGCCACGGCCAGGCTTGCCAACACTGGGATCAAGAAAAGGGCCCTCAAGACCTTCCCTGTCGTCTCCTTCTCC AACGAGGGGTTGAACTTGGAAGCCGAGTGCGTCATCTGCCTGTCGGAGTTCGCCACCGGCGACCGGGTCAAGATTCTGCCTAAGTGTAACCACGGCTTCC ACGTCAAGTGTATCGACAGGTGGCTTGGGTCCCACTCTTCCTGTCCTACTTGTCGCCACTGCCTCATCGAAACCTGCCGGAAAATCGTCGGCGCCGCCCC CACACCTTCGCCGGCGACGGTCGTGATAGAGGCTTCAACTGCTTCGGAAGTTTCTTCTCCTCATCTCCCTCCGCTATCAGTGTCACAACCACTGCCGCCG CCGCCACAGATGGCGGTGGCACTAGTGGAGGCTGTCGTTATCAGTATGCCGCCGTTGGAACAAGAGGATTTGGTACGGATCTATAGGGGAGCTAGCTTAG CTATAAAGTCCAAATTAGTAATTGGTAATTAG
AA sequence Show only first row Show all	>Lus10005817 pacid=23174707 polypeptide=Lus10005817 locus=Lus10005817.g ID=Lus10005817.BGIv1.0 annot-version=v1.0 MARRLLLNTPTPPAPARPTPPASTDSTFDANVVMVLSVLLCALICSLGLNSIIRCALRCSHLVPAGGQLSTASGAAATARLANTGIKKRALKTFPVVSFS NEGLNLEAECVICLSEFATGDRVKILPKCNHGFHVKCIDRWLGSHSSCPTCRHCLIETCRKIVGAAPTPSPATVVIEASTASEVSSPHLPPLSVSQPLPP PPQMAVALVEAVVISMPPLEQEDLVRIYRGASLAIKSKLVIGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	0	1
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	1.7	0.8866
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	2.4	0.8454
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	7.2	0.8411
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	7.9	0.8611
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	9.5	0.8376
					Lus10015031 [exp]	11.2	0.7291
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	12.6	0.8252
AT2G37035			unknown protein		Lus10013807 [exp]	12.8	0.7666
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	14.5	0.8369
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	14.5	0.8228

Compare expression of checked genes

Lus10005817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.