Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49210 129 / 5e-38 RING/U-box superfamily protein (.1) AT1G49200 127 / 6e-37 RING/U-box superfamily protein (.1) AT1G49230 124 / 4e-36 RING/U-box superfamily protein (.1) AT1G49220 125 / 5e-36 RING/U-box superfamily protein (.1) AT3G18773 124 / 8e-36 RING/U-box superfamily protein (.1) AT5G05280 102 / 9e-28 RING/U-box superfamily protein (.1) AT5G01880 92 / 4e-24 RING/U-box superfamily protein (.1) AT1G20823 92 / 6e-24 RING/U-box superfamily protein (.1) AT1G76410 92 / 8e-24 ATL8 RING/U-box superfamily protein (.1) AT3G10910 91 / 2e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006788 [exp] 185 / 1e-59 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 172 / 8e-55 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005815 [exp] 168 / 2e-53 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006786 [exp] 148 / 1e-45 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005816 [exp] 145 / 3e-44 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10005817 [exp] 145 / 5e-44 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006785 [exp] 144 / 1e-43 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10033515 [exp] 144 / 2e-43 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10020859 [exp] 144 / 3e-43 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010500 [exp] 143 / 2e-43 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 140 / 3e-42 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 134 / 7e-40 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 130 / 2e-38 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 99 / 1e-26 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 96 / 2e-25 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 95 / 1e-24 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 94 / 3e-24 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 93 / 3e-24 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 92 / 7e-24 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005818 pacid=23174745 polypeptide=Lus10005818 locus=Lus10005818.g ID=Lus10005818.BGIv1.0 annot-version=v1.0 ATGCTCTCTCGGTCTCAACTCAATAATTCGGTGCGCTCTACGATGCTCCCACTTGGTACCCGCCGCCGGCGACCACCACCACCGGCCGCCGGCCAACAAC TTCCGGCGACCGGAATAAAAAAGAAAGCGCTCAAGACCTTCCCCATCGTCACCTTCTCCTCCCGGTTGAACAACATGGACGACGAGTGCGTCATCTGCCT GTCGGAGTTTGTCTCCGGCGACCGGGTCAAGATTCTGCCCAAGTGTAACCATGGGTTCCACGTCAAGTGTATTGACAAGTGGCTTGGTGATCACTCTTCT TGTCCTACTTGCCGCCACTGCCTCATCGAGACCTGCAGGAAGATTGTCGCCGGCCAAGATTCTTCTTCTTCTACTCCTTCTCCGGCGGCTGGAGGTGTTG TTATTGGTATGCCGCCAATGGAAGCTGAAGGCCCCGTACGGGAGCACAGAATATTTAAGAGTATGTTCTTTTGGAGGAAAAATTGA
AA sequence Show only first row Show all	>Lus10005818 pacid=23174745 polypeptide=Lus10005818 locus=Lus10005818.g ID=Lus10005818.BGIv1.0 annot-version=v1.0 MLSRSQLNNSVRSTMLPLGTRRRRPPPPAAGQQLPATGIKKKALKTFPIVTFSSRLNNMDDECVICLSEFVSGDRVKILPKCNHGFHVKCIDKWLGDHSS CPTCRHCLIETCRKIVAGQDSSSSTPSPAAGGVVIGMPPMEAEGPVREHRIFKSMFFWRKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	0	1
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	1.0	0.9610
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	1.4	0.9527
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	1.7	0.9481
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	4.9	0.9388
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	4.9	0.9157
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	5.0	0.9379
AT1G34420			leucine-rich repeat transmembr...		Lus10006067 [exp]	5.7	0.8769
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	6.3	0.9239
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	6.6	0.9220
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	6.9	0.9265

Compare expression of checked genes

Lus10005818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.