Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25320 263 / 9e-80 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001490 [exp] 382 / 2e-121 AT2G25320 2419 / 0.0 TRAF-like family protein (.1) Lus10002926 [exp] 377 / 2e-119 AT2G25320 2345 / 0.0 TRAF-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025600 [exp] 323 / 9e-101 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.006G256400 [exp] 315 / 5e-98 AT2G25320 2377 / 0.0 TRAF-like family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005821 pacid=23174747 polypeptide=Lus10005821 locus=Lus10005821.g ID=Lus10005821.BGIv1.0 annot-version=v1.0 ATGCTTTTAGTTGATCTTCATTTGAGTTTAACATTCACTTGTATCGAATGTGTTTGGCTGATTGTGATCGATTGTTGTCTCTTATGTGGAAATCAGGAAG TAGCGGTGCCTAAGAACCGTTCATCGAAGTTATTCATGTCTGGTGGTATACACCCGGAGCAATCTGAGGAGCTATTGGGATTAATTGTAAATTCTTTAAG AGCACTAGATGGTGCTGTCCCTCAACGCTGTCCTGAGCCACGAAGGAGGCCTCAGTCTGCCCAAAAGATTGCTCTAGTTTTGGATAAAGCTCCTAAACAT TTAGAGCCACATCTAGTTGCTCTAGTACCAAAGCTGGTTGAGCATTCAGAACATCCTTTAGTAGCTTCTGTGCTCATTGAAAGACTCCAAAAGCCTGATG CAGAGCCTGCACTCCGCTTGCCTGGTTTTGGCGCTCTGACTGAACCGAAATGTGGCAGTGATGTGTGGGAACAAGTTCTATTGCAGTCTCTTGAACTTTT AGCTGATGCAAATGACGAACCCCTTGCCGCAACTATAGAAGCTGCATCCCAGTGCCAACATCTTCCCCAAGCAGTCAGATCTATTCGTTCTAGGCTGAAG TCTTTGGGACCCGAGGTTGCTCCTTGTGTTCTTGAACTTTTGAGTAGAACTGTAAATAGTTGGGGAGATGTGGCGGAAACTATACTTCGAGATATCAACT CCGATGATGACCTCTGTAGTGACGACACACCATCATCTTGTCGCCTTTTCTTATTTGGTGAAGACGGGCATGCGATAGATGGGCATGTTTTTCAGGCTAC TTCCGATTTCTCTGATATTTACGTTCTCGTCAAAATGCTGTCCATACCTTGCCTTGCTGTCGAAGCTTCTCAGACATTGAGAAAGCTGTAG
AA sequence Show only first row Show all	>Lus10005821 pacid=23174747 polypeptide=Lus10005821 locus=Lus10005821.g ID=Lus10005821.BGIv1.0 annot-version=v1.0 MLLVDLHLSLTFTCIECVWLIVIDCCLLCGNQEVAVPKNRSSKLFMSGGIHPEQSEELLGLIVNSLRALDGAVPQRCPEPRRRPQSAQKIALVLDKAPKH LEPHLVALVPKLVEHSEHPLVASVLIERLQKPDAEPALRLPGFGALTEPKCGSDVWEQVLLQSLELLADANDEPLAATIEAASQCQHLPQAVRSIRSRLK SLGPEVAPCVLELLSRTVNSWGDVAETILRDINSDDDLCSDDTPSSCRLFLFGEDGHAIDGHVFQATSDFSDIYVLVKMLSIPCLAVEASQTLRKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25320			TRAF-like family protein (.1)		Lus10005821 [exp]	0	1
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10036167 [exp]	10.6	0.8271
AT5G01850			Protein kinase superfamily pro...		Lus10025154 [exp]	12.4	0.7827
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	14.9	0.8237
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	20.4	0.8227
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	22.4	0.8248
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	34.4	0.8188
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	39.5	0.8074
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10036121 [exp]	42.3	0.8007
AT4G38225			unknown protein		Lus10026560 [exp]	47.7	0.8050
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	49.5	0.8026

Compare expression of checked genes

Lus10005821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.