Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33800 355 / 1e-123 Protein of unknown function (DUF579) (.1) AT4G09990 346 / 3e-120 Protein of unknown function (DUF579) (.1) AT1G09610 342 / 2e-118 Protein of unknown function (DUF579) (.1) AT1G71690 313 / 5e-107 Protein of unknown function (DUF579) (.1) AT1G67330 234 / 3e-76 Protein of unknown function (DUF579) (.1) AT1G27930 227 / 2e-73 Protein of unknown function (DUF579) (.1) AT2G15440 162 / 1e-47 Protein of unknown function (DUF579) (.1) AT3G50220 159 / 2e-46 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 155 / 5e-45 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT4G24910 116 / 2e-30 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005829 [exp] 555 / 0 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 313 / 3e-107 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 231 / 1e-74 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 229 / 5e-74 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 227 / 2e-73 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 227 / 3e-73 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 205 / 8e-65 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 169 / 2e-50 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 166 / 1e-49 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102200 [exp] 429 / 6e-153 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 405 / 2e-143 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 346 / 3e-120 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 345 / 6e-120 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 218 / 9e-70 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 214 / 2e-68 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 178 / 7e-54 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 170 / 1e-50 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 156 / 2e-45 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 153 / 2e-44 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10005822 pacid=23180235 polypeptide=Lus10005822 locus=Lus10005822.g ID=Lus10005822.BGIv1.0 annot-version=v1.0 ATGAGGCCAAAAACACAGCAATCCGCCATCAACGCCAAGGTAATCTTCCTCTCTTTCTTCTTCCTTTTCATCCTCTTCCTCGTCCTCTGGTCAACCTTCT CCTCCTCCAATCCCCCCTCCCATGTGACCACCCAACATTCCGAGCCCCAAGACGATCAATCCAAGCCTGACTGTCCCAAGACGATCAATCCCCAAACTCA AACTTGCACCAAAGCCCCGCCGTCCCTCGCCAACGCCCTGGTCCACTACGCCACAACAAACATAACCCCTCAACAAACCCTCAAAGAAGTCTCCGTCTCC CTCGGCATACTCGAGAAGAAATCCCCCTGTAATTTCCTCATTTTCGGCTTGGGCCACGACAGTCTCATGTGGTCATCTCTCAATTACGGCGGCCGCACCG TCTTCCTCGAAGAGGACAAGACTTGGATCGAGAAGGTCCTCGGGGATATCCCTTCCCTCGAGGCCTACCACGTCAGCTACGACACCAAGGTCCACCAGGC CGGAGGCCTCATGGAGGCCGGGATCGGAGACAAAGACTGCAAGGCCGTTTCCGATCCTAGAGAATCCAAGTGCCGATTGGCTCTCAAAGGGTTTCCGGCG GAGATCTACGAGATGAATTGGGATCTGATCATGGTGGACACTCCCACCGGGTACCATGACGAGGCTCCCGGGAGGATGACGGTGATATACACCACTGGGT TGATGGCGAGGAATAAAGAAACAGGGGAGACGGAAGTGTTTGTTCACGATGTGGATCGCACGGTAGAGGATAGATTCTCTAAGGCGTTTCTGTGCCAAGG TTACTTGACGGAGCAGGAGGGGAGGTTGCGGCATTTCACCGTTCCTAGCCATCGTGCTCGCCCTGGAAGACCTTTTTGCCCTTGA
AA sequence Show only first row Show all	>Lus10005822 pacid=23180235 polypeptide=Lus10005822 locus=Lus10005822.g ID=Lus10005822.BGIv1.0 annot-version=v1.0 MRPKTQQSAINAKVIFLSFFFLFILFLVLWSTFSSSNPPSHVTTQHSEPQDDQSKPDCPKTINPQTQTCTKAPPSLANALVHYATTNITPQQTLKEVSVS LGILEKKSPCNFLIFGLGHDSLMWSSLNYGGRTVFLEEDKTWIEKVLGDIPSLEAYHVSYDTKVHQAGGLMEAGIGDKDCKAVSDPRESKCRLALKGFPA EIYEMNWDLIMVDTPTGYHDEAPGRMTVIYTTGLMARNKETGETEVFVHDVDRTVEDRFSKAFLCQGYLTEQEGRLRHFTVPSHRARPGRPFCP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	0	1
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	1.0	0.9868
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	1.7	0.9799
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	2.0	0.9791
AT5G61340			unknown protein		Lus10034727 [exp]	3.7	0.9802
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	4.9	0.9706
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	5.7	0.9676
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	7.1	0.9746
AT5G02640			unknown protein		Lus10025282 [exp]	7.7	0.9660
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	9.0	0.9686
AT2G28410			unknown protein		Lus10022579 [exp]	9.8	0.9647

Compare expression of checked genes

Lus10005822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.