Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33800 345 / 1e-119 Protein of unknown function (DUF579) (.1) AT1G09610 342 / 2e-118 Protein of unknown function (DUF579) (.1) AT4G09990 339 / 3e-117 Protein of unknown function (DUF579) (.1) AT1G71690 308 / 5e-105 Protein of unknown function (DUF579) (.1) AT1G67330 235 / 2e-76 Protein of unknown function (DUF579) (.1) AT1G27930 226 / 7e-73 Protein of unknown function (DUF579) (.1) AT2G15440 163 / 6e-48 Protein of unknown function (DUF579) (.1) AT3G50220 157 / 6e-46 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 150 / 3e-43 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT4G24910 115 / 7e-30 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005822 [exp] 526 / 0 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 315 / 7e-108 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 231 / 1e-74 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 228 / 1e-73 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 227 / 3e-73 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 226 / 4e-73 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 204 / 2e-64 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 167 / 7e-50 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 162 / 6e-48 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102200 [exp] 416 / 1e-147 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 394 / 5e-139 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 341 / 3e-118 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 338 / 3e-117 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 217 / 2e-69 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 215 / 1e-68 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 178 / 5e-54 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 169 / 2e-50 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 155 / 3e-45 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 152 / 4e-44 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10005829 pacid=23180250 polypeptide=Lus10005829 locus=Lus10005829.g ID=Lus10005829.BGIv1.0 annot-version=v1.0 ATGAGGCCAAAAACGCAGCAATCAGCCATTAACGCCAAGGTAATCTTCCTCTCTTTCTTCTTCCTCTGCATCCTCATCCTCGGCCTCTGGGCAACCTTCT CCTCCCCCAATCCCCCCTCCCACGTCACCACCCAACATTCCGAATCCCAAGACGATCAATCCAAGCCTGACTGTCCCTCCACCTCCACCACAACTAGTAA TTCTAATCCCCAAACCCAAACGTGCACCAAAGCCCCGCCGTCCCTCGCCAACGCTCTGATCCACTACGCCACAACAAACATCACCCCTCAACAAACCCTC AAAGAAGTCTCCGTCTCCCTCCGCATCCTCGAGAAGAAATCCCCCTGTAATTTCCTCATCTTCGGCTTGGGCCACGACAGCCTCATGTGGTCCTCCCTCA ATTACGGCGGCCGCACCGTCTTCCTCGAAGAGGACAAGACTTGGATCGAGAAGGTCCTCGGGGATATCCCTTCCCTCGAGGCCTACCACGTCAGCTACGA CACCAAGGTCCACCAGGCCGGCGGACTTATGGAGGCCGGAATCGGAGACGAAGACTGCAAGGCTGTTTCCGATCCTAGAGAATCCAAGTGCCGATTGGCT CTCAAAGGGTTTCCGGCGGAGATCTACGAGATGAATTGGGATCTGATCATGGTGGACACTCCCACCGGGTACCATGACGAGGCTCCCGGGAGGATGACGG TGATATACACCACTGGGTTGATGGCGAGGAATAAAGAAACAGGGGAGACGGAAGTGTTTGTTCACGATGTGGATCGCACGGTAGAGGATAGATTCTCTAA GGCGTTTCTGTGCGAAGGTTACTTGACGGAGCAGGAGGGGAGGTTGCGGCATTTCACCGTTCCTAGCCATCATGCTCGCCCTGGAAGACCTTTTTGCCCT TGA
AA sequence Show only first row Show all	>Lus10005829 pacid=23180250 polypeptide=Lus10005829 locus=Lus10005829.g ID=Lus10005829.BGIv1.0 annot-version=v1.0 MRPKTQQSAINAKVIFLSFFFLCILILGLWATFSSPNPPSHVTTQHSESQDDQSKPDCPSTSTTTSNSNPQTQTCTKAPPSLANALIHYATTNITPQQTL KEVSVSLRILEKKSPCNFLIFGLGHDSLMWSSLNYGGRTVFLEEDKTWIEKVLGDIPSLEAYHVSYDTKVHQAGGLMEAGIGDEDCKAVSDPRESKCRLA LKGFPAEIYEMNWDLIMVDTPTGYHDEAPGRMTVIYTTGLMARNKETGETEVFVHDVDRTVEDRFSKAFLCEGYLTEQEGRLRHFTVPSHHARPGRPFCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	0	1
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	1.0	0.9868
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10027888 [exp]	3.5	0.9792
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	3.9	0.9783
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	4.5	0.9767
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	4.7	0.9692
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10013828 [exp]	5.7	0.9767
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	5.7	0.9709
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	6.0	0.9735
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	8.4	0.9675
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	8.5	0.9655

Compare expression of checked genes

Lus10005829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.