Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59650 441 / 8e-151 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 426 / 5e-145 Protein of unknown function (DUF1336) (.1) AT3G29180 322 / 5e-104 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 303 / 5e-97 Protein of unknown function (DUF1336) (.1) AT1G13970 279 / 1e-87 Protein of unknown function (DUF1336) (.1) AT5G24990 47 / 1e-05 Protein of unknown function (DUF1336) (.1) AT5G25010 44 / 0.0001 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039463 [exp] 960 / 0 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 402 / 2e-135 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 395 / 8e-133 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10026633 [exp] 286 / 2e-90 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 283 / 3e-89 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 278 / 1e-87 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10000174 [exp] 162 / 9e-48 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 115 / 3e-28 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074800 [exp] 553 / 0 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 465 / 2e-159 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G190500 [exp] 444 / 3e-151 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 316 / 2e-101 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.010G163100 [exp] 292 / 1e-92 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 47 / 3e-05 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 43 / 0.0004 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10005831 pacid=23180244 polypeptide=Lus10005831 locus=Lus10005831.g ID=Lus10005831.BGIv1.0 annot-version=v1.0 ATGGGTGGTTGTGCTTCGGCGCGTAGAGGGTGTGTTGTCTTCCCTTTCCCATCCAAGAGGAAGGTTAATGTTGAGGACAAGAATAAGAATGACAATGGAG AAGGAGGCCGCCGGAGAAGGAAATCCCGTAGGAGGATTATCAAGCGCAGGGTCTCATCTCGCAAGGTTGAAACTGCTGATCCTTCTCGCCTAACCGATCG GGCTTTCTCTAATCCCGTGTTTCAAGGAAGCATGGATGGTACTTGGTGCGATGCTACCTCAGTGCTTGAATCTGAATGGGATGATGAGTTTTATAGTGTT TATGAAGATGGGTCTTCTGTCATCGACTCTTATGAAAATGGATCTAGTATTGGCGTCCATTCTCCTAGGGATTTAAGCACAAGGGATTATCAACATAATG CTGGTCTTGCTCCTGATAATGTTCTCCCCAATTCAACTGGAAATGGCCCCAGTGGTTGCAGTGCGGGAATGAATCTGCCGCCCAAACACCCTAATTCTTC ATCCAAACTGAATGACACTCACAAGGAAGTCAATTCCGCTTCCACAGAGGAAGTTTCTAGTGTCAGTTTTGTAGGAGATGCGAGGGGAGTAGCTGATAGT CATTGCGGGGTTCTACAAAATAATTGCTTACCTTGTCTTCCATCAACGGTTCCCACTGTGGAAAAGAAAAAATCCATTACCTCGGATACTGCAAGCTCAA AGAAGAAATCCATGCTCAGGCTGTCGTTTAAATGGAGAGAAGAACACACTCCTACATTATTTGCCCCTAAGGGACTTTCACAAAGACAACTTGCTGGTTC TACTTTCCCCTACTGCCCGGCTGATAAGAAGATCTCTGGTTGCTGGTCTCCTATTGAGCCAAGTACTTTCAAAGTGAGGGGCAGAAACTACTTTAGGGAC AAGAAGAAAGAGCCTGCTCCTGAATGTGTTGCATTCTCCCCTTTTGCTGCTGACATTTTCTTATCTGAGAGGAAAATTCCTCATATCGCTCGATTTGTCG AACTTCCTACGTTTAGTTCATATGATGAAGTTCCAGCTGTTCTAGTTGTTAATGTTCAGGTACCACTATATCCTGCCTCAATTCTACAAGGTGAAAATGA TGGAGAGGGAATGAATTTGGTTATGTATTTTAAGCTATCCGAAAGTTACTCAAATGAGCTTCCCCTCCATTTCCGAGAAAACATTATGAAACTTATCAAT GATGAGGTTGAAAGAGTTAAAGGTTTCCCACTCGATACAATTGCACCATTTAGGGAAAGGTTGAAAATCATTGGCAGACTAGCAAACGTGAATGAGCTTC AACTAGGTGCTACTGAGAAGAAGCTTGTGAATGCTTATAATGAGAAACCTGTTCTCTCTCGGCCGCAGCACGAGTTCTACTTGGGGGAGAACTACTTTGA GATCGATCTGGATATGCACAGATTCAGCTACATCTCTAGGAAAGGGTTTGAAACATTTCACAACAGATTGAAGTACTGTGTATTGGACTTTGGCCTCACG ATTCAGGGATACAAGTCAGAAGACTTGCCTGAACATATGCTGTGCTGTATGCGGCTAAACGAGATTGACCACACAAAGTACAGCCAACTTGGGTGCTGA
AA sequence Show only first row Show all	>Lus10005831 pacid=23180244 polypeptide=Lus10005831 locus=Lus10005831.g ID=Lus10005831.BGIv1.0 annot-version=v1.0 MGGCASARRGCVVFPFPSKRKVNVEDKNKNDNGEGGRRRRKSRRRIIKRRVSSRKVETADPSRLTDRAFSNPVFQGSMDGTWCDATSVLESEWDDEFYSV YEDGSSVIDSYENGSSIGVHSPRDLSTRDYQHNAGLAPDNVLPNSTGNGPSGCSAGMNLPPKHPNSSSKLNDTHKEVNSASTEEVSSVSFVGDARGVADS HCGVLQNNCLPCLPSTVPTVEKKKSITSDTASSKKKSMLRLSFKWREEHTPTLFAPKGLSQRQLAGSTFPYCPADKKISGCWSPIEPSTFKVRGRNYFRD KKKEPAPECVAFSPFAADIFLSERKIPHIARFVELPTFSSYDEVPAVLVVNVQVPLYPASILQGENDGEGMNLVMYFKLSESYSNELPLHFRENIMKLIN DEVERVKGFPLDTIAPFRERLKIIGRLANVNELQLGATEKKLVNAYNEKPVLSRPQHEFYLGENYFEIDLDMHRFSYISRKGFETFHNRLKYCVLDFGLT IQGYKSEDLPEHMLCCMRLNEIDHTKYSQLGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59650		CW14	Protein of unknown function (D...		Lus10005831 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	4.5	0.7408
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	5.8	0.7561
AT5G04980			DNAse I-like superfamily prote...		Lus10034857 [exp]	13.1	0.7146
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10043402 [exp]	17.2	0.6633
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	19.9	0.7077
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	25.9	0.6998
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	26.6	0.7196
AT1G21840		UREF	urease accessory protein F (.1...		Lus10039022 [exp]	33.2	0.6827
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031879 [exp]	37.0	0.6984
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	43.9	0.6953

Compare expression of checked genes

Lus10005831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.