Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80180 39 / 0.0001 unknown protein AT1G15400 37 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074900 [exp] 51 / 2e-09 ND / Potri.001G172100 [exp] 38 / 0.0002 AT1G15400 100 / 3e-28 unknown protein Potri.003G062200 [exp] 38 / 0.0002 AT1G15400 79 / 1e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005832 pacid=23180240 polypeptide=Lus10005832 locus=Lus10005832.g ID=Lus10005832.BGIv1.0 annot-version=v1.0 ATGGAAGTGAGCAGTCAGATGCAGCAGCTGCAGAGATCGTCGGTTTCATTCCGGAGGCAGGGTTCTTCAGGTCGGGTTTGGGAGGATATCCGCGTAGACA GAAGCGGTCCGCTCTTGACCTCCTCTTTCAGCGGGCCCATGACTCCGCCGGCACCGAGGAGAAGCCAGGAGATTCGACATTTGGATAATATAAGGAGCGG TAGAGAAGAGAAGTTCCAATCTGGAGATCCAAGTGATGAATTGTCAAGGACGTCATCTTTGCCCGCCGACCAGAAATTACAACAGCGCCGAAACGGAGGC GCTCTTTTCTTCATCCGGTGTTGTTCGGGATCTCAAGCAACCTCTTGA
AA sequence Show only first row Show all	>Lus10005832 pacid=23180240 polypeptide=Lus10005832 locus=Lus10005832.g ID=Lus10005832.BGIv1.0 annot-version=v1.0 MEVSSQMQQLQRSSVSFRRQGSSGRVWEDIRVDRSGPLLTSSFSGPMTPPAPRRSQEIRHLDNIRSGREEKFQSGDPSDELSRTSSLPADQKLQQRRNGG ALFFIRCCSGSQATS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005832 [exp]	0	1
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	12.1	0.7601
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	27.2	0.7283
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	27.7	0.7283
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	30.0	0.7205
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	30.6	0.7273
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	42.2	0.7192
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	50.1	0.6985
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	53.9	0.7081
AT1G68110			ENTH/ANTH/VHS superfamily prot...		Lus10034431 [exp]	70.5	0.6961
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	80.2	0.6960

Compare expression of checked genes

Lus10005832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.