Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01660 129 / 8e-35 ATABC1, ATATH10, ABC1At ABC transporter 1 (.1) AT3G07700 41 / 0.0003 Protein kinase superfamily protein (.1.2.3) AT5G64940 40 / 0.0006 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G79600 40 / 0.0008 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038017 [exp] 158 / 2e-45 AT4G01660 772 / 0.0 ABC transporter 1 (.1) Lus10007201 [exp] 121 / 5e-32 AT4G01660 778 / 0.0 ABC transporter 1 (.1) Lus10010085 [exp] 120 / 9e-32 AT4G01660 780 / 0.0 ABC transporter 1 (.1) Lus10012317 [exp] 44 / 3e-05 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10006363 [exp] 44 / 3e-05 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035853 [exp] 42 / 0.0001 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10036636 [exp] 42 / 0.0001 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185400 [exp] 133 / 2e-36 AT4G01660 691 / 0.0 ABC transporter 1 (.1) Potri.014G168600 [exp] 43 / 8e-05 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G082500 [exp] 41 / 0.0002 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005833 pacid=23180247 polypeptide=Lus10005833 locus=Lus10005833.g ID=Lus10005833.BGIv1.0 annot-version=v1.0 ATGGCGAAAGAGGAATTAACTCGAGAATGCGACTACGAGTTGGAAGCAGTGAACCTGAAACGTTTCCGTCACCTCATCTCTAACAAGAAAGGTTCTATTG TCCCCATTGTTGTTGATGAGCTTTCAAGTAAAATAGTCCTTACCAGTGAGCTTGTTTCTGGAGTTCCCATTGACAAGGTTACATCACTAGATCAGGAAAC AAGGAATTACGTGGGGAGGAAGTTACTGGAGCTCACAATGATGGAGCTCTTTGTCCTCCGCTTTATATGCAGTCCTTTCCTCTCTATTTTCAAACATAAT CAAGGTCCTGGCGGAGGGTACAATTTCTGGGAGAGCAAAATGACTCAGGATGTGACGATGTTGGGTGCCAAAATGCTGAAGCACAGGCTGACGCCGCCTC CCGACGAGACCTATAGCCTCCATCGGAAACTCTCCGGCGTCTTGGCCTGCATCAAGTTTGGCTCCGTTGTGCCTTGCCGGGAAATGTTGATCGACATCTA CGACCATCACCGGTTCGAAGAACTCGCCACTGATGCTTGTGACTTGGTCCTAAAGTAG
AA sequence Show only first row Show all	>Lus10005833 pacid=23180247 polypeptide=Lus10005833 locus=Lus10005833.g ID=Lus10005833.BGIv1.0 annot-version=v1.0 MAKEELTRECDYELEAVNLKRFRHLISNKKGSIVPIVVDELSSKIVLTSELVSGVPIDKVTSLDQETRNYVGRKLLELTMMELFVLRFICSPFLSIFKHN QGPGGGYNFWESKMTQDVTMLGAKMLKHRLTPPPDETYSLHRKLSGVLACIKFGSVVPCREMLIDIYDHHRFEELATDACDLVLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10005833 [exp]	0	1

Compare expression of checked genes

Lus10005833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.