Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28460 363 / 8e-126 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039461 [exp] 191 / 3e-61 AT3G28460 119 / 5e-34 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349800 [exp] 421 / 9e-149 AT3G28460 424 / 2e-150 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03602 [flax] [poplar] Cons_hypoth95 Conserved hypothetical protein 95
Representative CDS sequence Show only first row Show all	>Lus10005835 pacid=23180242 polypeptide=Lus10005835 locus=Lus10005835.g ID=Lus10005835.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCAGCGTCACCAAGTCTCTCTCCTCTCTACTTCAACAGTAAATTTCTCTCAAGTGCTCCTATTCGCCCACTCTCCGTTCTTTCATCCTCCC CCTCCTCCACCGGTGGTCATTACGCCGCAATCGTATGCTCTTACAGTAACAGTGCGCCTTTCTTTCCAGAATCAAGAAGCGAATCTGCGACCGACGATGA GAGATCGTTACTGGAAAGCTACGGCCTCGATCCTGATTCTTTCTTATCCAAACCCGCTCCTAAGGGAAAGCGAAAAAAAGAACTACAAAAAACTGGAAGA GAAAAGCAAGTCCTGGAAGAGAAGGCGGTCAAACCTCAAAGGACAACGCACAGGCTGCTTCAGGTACTTGGAGGAAAGGCTAAAAGAAAGAAGTTGCTTT CAGCAAAGGGGATGGATGTCCGGCCGATGATGGAAGTGGTTAAAGGCTCAGCTTTTGACATATTACAGGCTGCTGGTGGCTGTCCTGCTTCGTTGAGGCC TGGCCGCTGGTTGGATTTGTATAGTGGCACTGGATCAGTTGGTATTGAAGCTGTCAGTAGGGGTTGTGTTCAGGCTCATTTTGTTGAGATGGATCCGTGG GTTATTTCAAATGTTCTACAACCAAATTTGGAGTGGACTGGATTCCTCGATCTGTCAGTTATACACGCAGTTCCTGTTGAAAGCTTTCTAAATCAGGCAG CTCATTTTCTAGGTGAGAATAAGACGTTTGATTACATCAGTGTTACACCTCCGTATACACAAGTTGATTATGGGATATTGATGGAGCTCGTTTCAAAATC TGGCCTTATAGGAGAAAATACATTTGTTTTGGTTGAATATCCTCTGAAGACAAACATGCTAGATTCATGTGGAGGCCTCATGAAGATAACTGACCGGCGC TTTGGCCGCACTCTTTTAGCAATATACGGACCAGAGTGGGCACAGAAGAAAAGGAAGTCAGAGATGTTGCCTCAGACAATGATAGAAGTTTGA
AA sequence Show only first row Show all	>Lus10005835 pacid=23180242 polypeptide=Lus10005835 locus=Lus10005835.g ID=Lus10005835.BGIv1.0 annot-version=v1.0 MAVSASPSLSPLYFNSKFLSSAPIRPLSVLSSSPSSTGGHYAAIVCSYSNSAPFFPESRSESATDDERSLLESYGLDPDSFLSKPAPKGKRKKELQKTGR EKQVLEEKAVKPQRTTHRLLQVLGGKAKRKKLLSAKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAVSRGCVQAHFVEMDPW VISNVLQPNLEWTGFLDLSVIHAVPVESFLNQAAHFLGENKTFDYISVTPPYTQVDYGILMELVSKSGLIGENTFVLVEYPLKTNMLDSCGGLMKITDRR FGRTLLAIYGPEWAQKKRKSEMLPQTMIEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	0	1
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	1.4	0.9078
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	5.1	0.8563
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	10.7	0.8818
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	11.1	0.8895
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	11.3	0.8186
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	11.5	0.8794
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10037898 [exp]	13.6	0.8092
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	15.0	0.8366
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	15.2	0.8672
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10035823 [exp]	18.0	0.8565

Compare expression of checked genes

Lus10005835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.