Plant FIBer expression Database

Lus10005836 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28455 50 / 1e-08 CLE25 CLAVATA3/ESR-RELATED 25 (.1)
AT1G69970 42 / 3e-05 CLE26 CLAVATA3/ESR-RELATED 26 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039460
[exp]
156 / 3e-50 AT3G28455 56 / 5e-12 CLAVATA3/ESR-RELATED 25 (.1)
Lus10010735
[exp]
41 / 7e-05 AT1G69970 66 / 3e-15 CLAVATA3/ESR-RELATED 26 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G074600
[exp]
67 / 6e-15 AT3G28455 67 / 3e-16 CLAVATA3/ESR-RELATED 25 (.1)
Potri.010G039800
[exp]
45 / 2e-06 AT1G69970 72 / 8e-18 CLAVATA3/ESR-RELATED 26 (.1.2)
Potri.008G191500
[exp]
41 / 5e-05 AT1G69970 64 / 2e-14 CLAVATA3/ESR-RELATED 26 (.1.2)
PFAM info
Representative CDS sequence
>Lus10005836 pacid=23180246 polypeptide=Lus10005836 locus=Lus10005836.g ID=Lus10005836.BGIv1.0 annot-version=v1.0
ATGGGGAACGGGAGTAGTAGGATTTTCAGCATGATCTCTAGGACTGTGTTGTTGCTGGGGGTAATTTGGTTCTTGTATGTGGGAGTTGTAGCAGCAAGCC
ATGCTGCAAACAGAAAACTGCAAAGAAATGCAGTTTCATCAACGGGAAAGCACCATTCTCATCAGAAATTGGATCTCCATTATGTGAGCAAGAGAAGAGT
GCCCAATGGACCTGACCCGATTCATAACAGGGATTATCCAATGCAGCAGTTAGTTAGTTGCTGTGAGGGTAGCTTCTTGCTGCTTCCTATATATGCTTTC
ATTATTTCGGAAACTTGCTTACTCTTAATAATTTTGTCTCCAGGAAAGCATCCCAGTCTGGACAGCGACCAGGCCGAACATAACATGGAAGATGGCAAAG
CTGGCCTTGGGGCAGAGCTTCTCCACTTAAATTATAAAATGATAGCAGTAGTAGATAGTTTCATTAAGGCAGTTGAAGTTTCTGTGAAGCTATCCTGCTG
A
AA sequence
>Lus10005836 pacid=23180246 polypeptide=Lus10005836 locus=Lus10005836.g ID=Lus10005836.BGIv1.0 annot-version=v1.0
MGNGSSRIFSMISRTVLLLGVIWFLYVGVVAASHAANRKLQRNAVSSTGKHHSHQKLDLHYVSKRRVPNGPDPIHNRDYPMQQLVSCCEGSFLLLPIYAF
IISETCLLLIILSPGKHPSLDSDQAEHNMEDGKAGLGAELLHLNYKMIAVVDSFIKAVEVSVKLSC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G28455 CLE25 CLAVATA3/ESR-RELATED 25 (.1) Lus10005836
[exp]
0 1
AT1G30320 Remorin family protein (.1) Lus10038521
[exp]
2.0 0.7546
AT1G30320 Remorin family protein (.1) Lus10038522
[exp]
3.5 0.7385
AT3G51060 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENC... Lus10028352
[exp]
11.7 0.7219
AT1G59077 unknown protein Lus10022089
[exp]
12.2 0.7878
AT5G55310 TOP1alpha, TOP1... DNA topoisomerase 1 beta (.1) Lus10032571
[exp]
12.6 0.7315
AT4G34570 THY-2 thymidylate synthase 2 (.1) Lus10023550
[exp]
17.0 0.7079
AT1G58220 MYB Homeodomain-like superfamily p... Lus10028172
[exp]
34.3 0.6837
AT3G25840 Protein kinase superfamily pro... Lus10021688
[exp]
35.0 0.6849
AT4G36650 ATPBRP plant-specific TFIIB-related p... Lus10024022
[exp]
35.1 0.7066
AT3G58480 calmodulin-binding family prot... Lus10016219
[exp]
36.5 0.6923

Lus10005836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.