Plant FIBer expression Database

Lus10005837 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039459
[exp]
189 / 2e-61 AT3G28420 58 / 1e-10 Putative membrane lipoprotein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10005837 pacid=23180238 polypeptide=Lus10005837 locus=Lus10005837.g ID=Lus10005837.BGIv1.0 annot-version=v1.0
ATGGAATACTACAACAAGTTCAGTTACGAGAGGGAAGCAACAGATGAAAACAATAACGAAAATGAAGAAAACACGATGATGCTGTACGCAGCAGCAGCAG
CAGGAACTTCCACCATAGCAATGGCAGCCTGGGCGAAGAACCTTGGAGCTATTATGTTGATTATGGAACAATGGCGGGTCCAGGTTTTCCTGCTTCTCAA
CTTCATTCTACTGGCCATCTTCCTCACTTCCCTCCGCTCCTCCTCTGCTTCTCCGATCCATCAAAACCAACCCACATCGAAATCGGAGATCCCAAGTGAG
AAGAGAGCAGAAGAAGCTGGAAGAGTAACAAGGAATGTGACTAATGAGGATACAAAAGAGAAAGGTGGAAACGAAGTGGATAACTATCATGATGATGATG
ATCATAGCTTGTTGTTGTCCAATGAGGAATTGAATGAGAGAGCAGAAGCTTTCATTGCAATGTTCAGAGAGCATTTGGTTAGAGATGCAGCAATTGAAGT
CAGAGATTTGGAGTTGGGTCTTAAGCAAAGCAGGACAGTTATCTGCTGA
AA sequence
>Lus10005837 pacid=23180238 polypeptide=Lus10005837 locus=Lus10005837.g ID=Lus10005837.BGIv1.0 annot-version=v1.0
MEYYNKFSYEREATDENNNENEENTMMLYAAAAAGTSTIAMAAWAKNLGAIMLIMEQWRVQVFLLLNFILLAIFLTSLRSSSASPIHQNQPTSKSEIPSE
KRAEEAGRVTRNVTNEDTKEKGGNEVDNYHDDDDHSLLLSNEELNERAEAFIAMFREHLVRDAAIEVRDLELGLKQSRTVIC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G28420 Putative membrane lipoprotein ... Lus10005837
[exp]
0 1
AT3G28420 Putative membrane lipoprotein ... Lus10039459
[exp]
1.0 0.9248
AT1G49890 QWRF2 QWRF domain containing 2, Fami... Lus10014636
[exp]
2.8 0.8842
AT5G65980 Auxin efflux carrier family pr... Lus10035978
[exp]
2.8 0.8742
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Lus10016722
[exp]
4.5 0.8824
AT1G69420 DHHC-type zinc finger family p... Lus10026632
[exp]
7.6 0.8457
AT1G49890 QWRF2 QWRF domain containing 2, Fami... Lus10033792
[exp]
8.7 0.8846
AT3G24660 TMKL1 transmembrane kinase-like 1 (.... Lus10011886
[exp]
9.2 0.8644
AT3G60580 C2H2ZnF C2H2-like zinc finger protein ... Lus10007474
[exp]
11.2 0.8800
AT2G17525 Pentatricopeptide repeat (PPR)... Lus10016688
[exp]
12.5 0.8394
AT4G35240 Protein of unknown function (D... Lus10012276
[exp]
14.9 0.8882

Lus10005837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.