Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1774 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1640 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1632 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 1619 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 1618 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 1057 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 1009 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G62150 964 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G10680 957 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G02520 955 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039458 [exp] 2331 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 2085 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 1257 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1244 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 1242 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 1142 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10030674 [exp] 1051 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1050 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1037 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074000 [exp] 1904 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1812 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1293 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1273 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1253 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 1229 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 1228 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1201 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1153 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 1074 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10005839 pacid=23180248 polypeptide=Lus10005839 locus=Lus10005839.g ID=Lus10005839.BGIv1.0 annot-version=v1.0 ATGGGTGGGGATGAGGAGATCAAAAGTAAAAAGAAGGACAAGGGAAGTGATATAGGATCGATGAAGACGATATTTATGCATGCAGAGAAGGTGGACTGCA TTCTCATGATTTTGGGATGCATTGGGTCGATAGGAGATGGATTTTCTACCCCGCTCATGTTATTCGTTACTAGCAAGTTGATGAACAACATCGGTGGTTC CATCAATGGTTCTATGGACGCTTTTCTACACAGCATCAACATGAATTCGCTAGCTCTTTGTTACTTGGCTTGTGGACAATGGATCCTCTGTTTCATGGAG GGATATTGTTGGAGTAGAACAGGGGAAAGGCAAGCTTCAAGAATGAGGGCTAGGTATTTGAGAGCTGTACTCAGACAAGAAGTTGGTTACTTTGATTTGC ATGTAACAAGCACCGCTGAGGTCATCTCCAGCGTCTCTAATGACACCCTTGTTATTCAAGATGTGCTCAGTGATAAGGTGCCCAACTTGTTGATGAATTT ATCCACCTTCATCTCCTGCTACCTGGTTGGGTTGGTAATGTTGTGGAGGCTGGCGATTGTTGGGATTCCATTCATTGTGATTTTGGTGATCCCTGGAATT ATGTACGGAAGGACTTTGATGGTGCTAGCAAGGAAGATGAGAGACGAGTACAACAAGGCAGGGAACATAGCAGAGCAGGCAATCTCTTCAGTAAGAACTG TGTATGCATTTGTTGCCGAGGACAAAACCACAGCTGCATATTCAGCAGCGTTAGAGCTGTGTGTGAAATTGGGGATGAAGCAAGGCTTGGCTAAAGGACT TGCTGTGGGAAGTAACGGCGTTGTTTTTGCTATTTGGTCATTCATGTGTTACTACGGTGGCAGAATGGTCATGTACCACGGTGCTCAAGGCGGTACCGTT TTTGCTGTAGGAGCTGCTATAGCTGTTGGCGGATTGGCACTTGGGGCTGGATTGTCCAACCTAAAGTACTTGTCAGAAGGATGTTCAGCTGGGGAACGTA TCCAGCAAGTGATAAAGCGAGTCCCCAAGATAGATGTGGAGAACCCAGATGGGGTAATTCTGGAAAATGTGAGGGGAGAAGTTGAATTCAGGAAGGTCCA ATTTGCATACCCATCAAGGCCAGAGAGCATAATCTTGGTGGATTTTGACCTGAACGTACCGTCAGGGAGGACTGTAGCTCTAGTGGGTGGGAGTGGATCA GGTAAATCAACAGTGATAGCACTGTTGCAAAGATTTTATGATCCATTGGGTGGAGAGATACTGGTTGATGGAGTTGCTATAGACAAGTTGCAGCTTAAGT GGGTAAGGTCTCAGATGGGTCTGGTGAGCCAAGAACCAGCCTTGTTTGCCACGTCCATAAAGGAAAACATACTTTTTGGTAAAGAAGATGCTTCAATGGA AGAGATTATGGAAGCTGCCAAAGCTGCTAATGCGCACAATTTCATATGTCAGTTACCTCAGGGATATGATACCCAGGTAGGGGAGAGAGGAGTGCAAATG TCAGGAGGGCAAAAGCAGAGAATAGCCATAGCAAGAGCAGTGATCAAAGCACCAAGGATCCTCCTTCTCGACGAAGCAACCAGCGCACTCGACTCCGAAT CAGAAAGGGTTGTTCAGGCAGCACTAGACAAGGCAGCCGTTGGCAGGACCACCATCATTATTGCTCACCGCCTATCCACCGTCCGTGATGCAGACTTGAT CGCAGTGGTTCAGAATGGTCAGGTCAACGAACTAGGATCTCACAATGACCTCATCCAAAACCCAGATGGGCTCTACACCTCCCTAGTCCACCTTCAACAA ACAGGGAAAGAATACAGCAGCGCCGGCTCATCATCGCAAGCACCAGACACCAATACTAATAATAATATTACCAACAGTGCTAATGATATGAACAACATTA GCAGCCGGAGAATGTCAATAATGAGCAGGTCAAGCTCTGCCAATTCGGCCATGGCACAGATGAATAATCCAACGGTTGAGGAGCAGCAGGAGTTTCCAGT GCCATCATTCAGAAGGTTGTTGGCACTGAACCTGCCAGAATGGAAGCAAGGAATGATGGGGTGTGCTGGTGCAATTCTGTTTGGTGGGATTCAGCCTACC TATGCGTTTACAATGGGGTCGATGATATCCGTGTTTTTCGTGACGGACCACGCTGAAATGAAGCACAAGACGGCGTTGTACGCGTTGAGCTTTCTCGGTC TAGCCGTTGCATCCATGATTGTTAACGTCGTTCAGCATTACAACTTCGCTTACATGGGAGAGTGTCTGACTAAGAGGATCAGGGAACGTATGTTGTCAAA GGTTCTGACTTTGGAAGTTGGGTGGTTTGATCAGGACGACAACTCCAGCGGGGCTGTTTGCTCTAGACTTGCCAAAGATGCCAATGTGGTGAGGTCCGTC GTTGGGGACCGAATGGCATTGATAATCCAAACAATCTCGGCTGTGACAATCGCGTGCACGATGGGGCTAGTCATTGCATGGCGGCTAGCAATAGTGATGA TCGCCGTCCAACCAATGATCATCGTCTGCTTCTACGCACGTCGTGTACTATTGAAAAATATGTCACATAGAGCCATCAAGCTCCAAGAAGAGAGCGGCAA GGTAGCTGCAGAGGCCGTGTCCAACCTCCGCACCATCACTGCCTTCTCCTCCCAAGACCGTGTCCTTGGAATCCTGGAGAAGGCCCAAATAGGCCCGCGT AAAGAGAGCATCCGCCAGTCATGGTACACTGGGCTCGGCCTCGGCACTTCCCAGAGTCTCATGTCTTTCACTTGGGCACTCGACTTTTGGTATGGTGGCA AGCTCATCTCTCAGGGCATCATTACCGTCAAAGCCCTCTTTGAGACCTTCTTGATCCTCGTCAGCACTGGTCGGGTCATAGCCGATGCTGGAGCCATGAC CTCGGATCTCGCCAAGGGATCCGACGCCGTGGGTTCTGTTTTTGCCATCTTGGATCGGTACACAAAGATCGAGCCAGACGATGACGAAGGACACAAGTCG GTGAAGATAACGGGCCAGATCGAGCTTCGTGATATCGACTTCGCGTACCCGGCTAGACCTGATGTTATGATATTTAGAGGATTCTCGATTCGAATCGAAG CTGGAAAATCTACGGCTCTGGTTGGGCAAAGTGGGTCGGGTAAGTCGACAATCATCGGGCTAATTGAGCGGTATTACGACCCGCTAAGGGGAACCGTGAA GATCGATGGTCGAGACATACGATCATACCACCTCCGGTCGCTGAGGCAACACTTGGCACTTGTCAGCCAAGAGCCGACTCTGTTCGCGGGTACGATAAAG GAGAACATCGCCTACGGAGCCGCGTTATCGGTAAATGAATCAGAGATTGTCGAGGCGGCGAAGGCGGCAAACGCTCATGACTTCGTGGCAGCGTTGAAGG ACGGGTACGAAACGTGGTGCGGGGATAGAGGAGTGCAGCTTTCAGGAGGGCAAAAGCAGAGGATTGCGATAGCGAGAGCGATACTGAGAAATCCGGGAGT GCTTTTGTTAGACGAGGCGACAAGTGCGTTGGATAGTCGGTCGGAGAAGGTGGTCCAGGAAGCGCTGGAGCGAGTGATGGTTGGACGGACGAGCGTAGTG GTGGCCCACCGACTGAGTACGATTCAAAAATGCGATACGATTGCTGTGTTGGACAAAGGAAAGGTTGTGGAGAAAGGGACCCACTCGACGTTGTTGTCGA AAGGTCCTACGGGGGTTTACTTTTCCCTGGTTAGTCTACAGAGGACGCCAACCGCAGCAGCACCTACTACGCATATTTTCAACTAA
AA sequence Show only first row Show all	>Lus10005839 pacid=23180248 polypeptide=Lus10005839 locus=Lus10005839.g ID=Lus10005839.BGIv1.0 annot-version=v1.0 MGGDEEIKSKKKDKGSDIGSMKTIFMHAEKVDCILMILGCIGSIGDGFSTPLMLFVTSKLMNNIGGSINGSMDAFLHSINMNSLALCYLACGQWILCFME GYCWSRTGERQASRMRARYLRAVLRQEVGYFDLHVTSTAEVISSVSNDTLVIQDVLSDKVPNLLMNLSTFISCYLVGLVMLWRLAIVGIPFIVILVIPGI MYGRTLMVLARKMRDEYNKAGNIAEQAISSVRTVYAFVAEDKTTAAYSAALELCVKLGMKQGLAKGLAVGSNGVVFAIWSFMCYYGGRMVMYHGAQGGTV FAVGAAIAVGGLALGAGLSNLKYLSEGCSAGERIQQVIKRVPKIDVENPDGVILENVRGEVEFRKVQFAYPSRPESIILVDFDLNVPSGRTVALVGGSGS GKSTVIALLQRFYDPLGGEILVDGVAIDKLQLKWVRSQMGLVSQEPALFATSIKENILFGKEDASMEEIMEAAKAANAHNFICQLPQGYDTQVGERGVQM SGGQKQRIAIARAVIKAPRILLLDEATSALDSESERVVQAALDKAAVGRTTIIIAHRLSTVRDADLIAVVQNGQVNELGSHNDLIQNPDGLYTSLVHLQQ TGKEYSSAGSSSQAPDTNTNNNITNSANDMNNISSRRMSIMSRSSSANSAMAQMNNPTVEEQQEFPVPSFRRLLALNLPEWKQGMMGCAGAILFGGIQPT YAFTMGSMISVFFVTDHAEMKHKTALYALSFLGLAVASMIVNVVQHYNFAYMGECLTKRIRERMLSKVLTLEVGWFDQDDNSSGAVCSRLAKDANVVRSV VGDRMALIIQTISAVTIACTMGLVIAWRLAIVMIAVQPMIIVCFYARRVLLKNMSHRAIKLQEESGKVAAEAVSNLRTITAFSSQDRVLGILEKAQIGPR KESIRQSWYTGLGLGTSQSLMSFTWALDFWYGGKLISQGIITVKALFETFLILVSTGRVIADAGAMTSDLAKGSDAVGSVFAILDRYTKIEPDDDEGHKS VKITGQIELRDIDFAYPARPDVMIFRGFSIRIEAGKSTALVGQSGSGKSTIIGLIERYYDPLRGTVKIDGRDIRSYHLRSLRQHLALVSQEPTLFAGTIK ENIAYGAALSVNESEIVEAAKAANAHDFVAALKDGYETWCGDRGVQLSGGQKQRIAIARAILRNPGVLLLDEATSALDSRSEKVVQEALERVMVGRTSVV VAHRLSTIQKCDTIAVLDKGKVVEKGTHSTLLSKGPTGVYFSLVSLQRTPTAAAPTTHIFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	0	1
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	1.4	0.8572
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10013158 [exp]	4.9	0.7981
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	6.9	0.8363
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	7.7	0.8316
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	9.4	0.8588
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	9.5	0.7916
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	12.4	0.8084
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	12.7	0.8170
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	14.1	0.7456
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	15.6	0.7988

Compare expression of checked genes

Lus10005839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.