Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01330 202 / 1e-63 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT3G48160 171 / 3e-51 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT5G14960 147 / 3e-42 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT2G36010 49 / 1e-06 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT1G47870 44 / 4e-05 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G22220 44 / 6e-05 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039455 [exp] 447 / 3e-157 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1) Lus10032439 [exp] 187 / 3e-57 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10042941 [exp] 184 / 7e-56 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10033151 [exp] 54 / 2e-08 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10029421 [exp] 50 / 9e-07 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10004217 [exp] 49 / 2e-06 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10016972 [exp] 47 / 6e-06 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 46 / 1e-05 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10021298 [exp] 44 / 8e-05 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075300 [exp] 205 / 2e-64 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.015G070300 [exp] 204 / 3e-64 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.016G072300 [exp] 49 / 1e-06 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.006G205100 [exp] 48 / 3e-06 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.004G200800 [exp] 45 / 2e-05 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 45 / 2e-05 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.002G023400 [exp] 43 / 0.0001 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005840 pacid=23180237 polypeptide=Lus10005840 locus=Lus10005840.g ID=Lus10005840.BGIv1.0 annot-version=v1.0 ATGCTTATTCTTTGTTTTGATGCAGACAGCAAGAGAGAAAAATCACTATGGCTTCTTACTCAGAATTTTGTCAAGCTTTTCCTTTCTTCTAATGAAGACA TGATCACACTTGATACTGCTGCAACGGCTTTGCTGGGTGATTCTGTCAATTCAACAGCAATGCGAACAAAAGTAAGACGACTGTATGACATTGCCAATGT TCTGTCTTCCATGAATCTGATTGAAAAGACTCATCACCCTGAAAACAGGAGGCCTGCTTTTAGATGGATGGGATGGAGAGGAAACAATGGAGACGTAGAC ACTGTGAAATTCCAGACAAACAAGAGAACTTTTGGGGCTGATATCACCAACTTTGCGTCAAAGAGGAACAGGGTGGATTGGATTGATGAGAAGGAAAACA CACCAGGTCATAAAAGATTGCAGGAAATGCATAGGGATAATCATGGAAGCAAGCTGAAGCAAAATACGGAGATAAAATCTAAGAGCTTTGTTTTTGGTCC GTTCAGTCCTACTGGTATGAACAAAGTAAGCAGCGCAGGAAATAAAAGTACAAGAGATATACAGGATGTGGAGACCCTAGCTTCTACGTGCTATCCACAA TACTGCAATGAAGCTATAGGGGAGCTGTTAGGTCACTATGTAGAGGCATGGAAATCATGGCATGTTGGAGTTTCCAGGAGAGAAAGGCCCGAGCGAGATC GTGATTTCCAGAAGAGATTACCACCACCAACATAG
AA sequence Show only first row Show all	>Lus10005840 pacid=23180237 polypeptide=Lus10005840 locus=Lus10005840.g ID=Lus10005840.BGIv1.0 annot-version=v1.0 MLILCFDADSKREKSLWLLTQNFVKLFLSSNEDMITLDTAATALLGDSVNSTAMRTKVRRLYDIANVLSSMNLIEKTHHPENRRPAFRWMGWRGNNGDVD TVKFQTNKRTFGADITNFASKRNRVDWIDEKENTPGHKRLQEMHRDNHGSKLKQNTEIKSKSFVFGPFSPTGMNKVSSAGNKSTRDIQDVETLASTCYPQ YCNEAIGELLGHYVEAWKSWHVGVSRRERPERDRDFQKRLPPPT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	0	1
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	2.0	0.9007
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	2.2	0.8867
AT2G28130			unknown protein		Lus10021421 [exp]	2.4	0.8801
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	5.0	0.8382
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	5.7	0.8931
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	6.0	0.8918
					Lus10005797 [exp]	7.0	0.8720
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	8.5	0.8581
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	9.2	0.8876
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	13.3	0.8621

Compare expression of checked genes

Lus10005840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.