Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026425 [exp] 93 / 2e-24 ND 37 / 0.008 Lus10011714 [exp] 71 / 7e-16 ND / Lus10000368 [exp] 42 / 3e-05 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025507 [exp] 39 / 0.0002 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005843 pacid=23160126 polypeptide=Lus10005843 locus=Lus10005843.g ID=Lus10005843.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGATATAAAAAATTTAGGAGTGGGTTTAGAGATCTGGAGACGGAAAACGATGCTGAAGATGATGGAGATGAAATATCAGTGGAGAATTTAT CAAATTCAGATAGTCTGCCACGAAAGGGGAGGAGCTCAATGAAACAAAAAGAACAAGTCAAAGAAGGAATGGTTTTGGAAGTAAAGAAACACAAAACCAA GGCTCGGGTGTACATGGGGAAACGTGACTGGCTGGCATTTTCCAAGGCCAACCATCTTCAATTGGGAGATGTGTGCACTTTTGAGGTGATGGATGTTGAC GACAATGTGCTTGTGCTCAATGTTTCCGTCTCCCAGTCCGGTTAG
AA sequence Show only first row Show all	>Lus10005843 pacid=23160126 polypeptide=Lus10005843 locus=Lus10005843.g ID=Lus10005843.BGIv1.0 annot-version=v1.0 MASGYKKFRSGFRDLETENDAEDDGDEISVENLSNSDSLPRKGRSSMKQKEQVKEGMVLEVKKHKTKARVYMGKRDWLAFSKANHLQLGDVCTFEVMDVD DNVLVLNVSVSQSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005843 [exp]	0	1
					Lus10010827 [exp]	1.4	1.0000
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	2.0	1.0000
					Lus10022511 [exp]	3.0	1.0000
					Lus10040033 [exp]	3.3	0.9466
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	3.5	1.0000
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	3.5	1.0000
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	3.9	1.0000
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	4.0	0.9902
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	4.6	1.0000
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	5.2	0.9756

Compare expression of checked genes

Lus10005843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.