Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67623 76 / 3e-17 F-box family protein (.1) AT1G74875 72 / 4e-16 unknown protein AT2G35280 52 / 3e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022147 [exp] 190 / 1e-63 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10030128 [exp] 183 / 1e-59 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10037978 [exp] 174 / 1e-55 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 170 / 7e-54 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10023768 [exp] 146 / 3e-46 AT1G74875 66 / 6e-14 unknown protein Lus10038720 [exp] 108 / 1e-30 ND 41 / 8e-05 Lus10006434 [exp] 64 / 5e-13 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 60 / 2e-11 AT1G67623 57 / 4e-09 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 129 / 5e-38 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 120 / 8e-35 AT1G67623 102 / 6e-26 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005844 pacid=23160118 polypeptide=Lus10005844 locus=Lus10005844.g ID=Lus10005844.BGIv1.0 annot-version=v1.0 ATGGCCCCATCAATATCTTCTCTCTGCCATCTCCTTAGAGACATGCTCGTCGACGTCCTCGCCAGCGTAGCCATCACATCCATCGCTGACCTCGTTAGCG CAAAATTGACATTCAAGATCCTGTCAGACCCTTCCGCAGATGACTACGTATACCGCCACGTCGAGATCTCCAAAATCCCCCTCATGCCTTGGAAGATCAA CCACAAATCTGTCCTCGATCGATGTGTAACCACCGGTTACCCTGAGGCTCTGTTCCGCCAAGGCATAGTCGAGTTCTTCAGCTCGCTTGAAATTCAGTCA GGCCTTGCCAATTTAATGTCTGCAGCCTGGCCGGGTCACCTGGAATCGATTTACATTTGTGGAATCGTCTTGTTGTGCTTGGCCAGGAAGAAGAAGAGAT GA
AA sequence Show only first row Show all	>Lus10005844 pacid=23160118 polypeptide=Lus10005844 locus=Lus10005844.g ID=Lus10005844.BGIv1.0 annot-version=v1.0 MAPSISSLCHLLRDMLVDVLASVAITSIADLVSAKLTFKILSDPSADDYVYRHVEISKIPLMPWKINHKSVLDRCVTTGYPEALFRQGIVEFFSSLEIQS GLANLMSAAWPGHLESIYICGIVLLCLARKKKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67623			F-box family protein (.1)		Lus10005844 [exp]	0	1
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	13.7	0.7222
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	24.7	0.6844
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	33.9	0.6635
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	46.1	0.6607
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	46.3	0.6788
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	46.6	0.6607
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	47.4	0.6801
					Lus10011637 [exp]	66.3	0.6494
					Lus10015636 [exp]	71.5	0.6264
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	73.7	0.6456

Compare expression of checked genes

Lus10005844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.