Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13225 186 / 2e-48 WW domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010578 [exp] 925 / 0 AT3G13225 231 / 3e-65 WW domain-containing protein (.1.2) Lus10010579 [exp] 801 / 0 AT3G13225 249 / 1e-73 WW domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G371600 [exp] 309 / 4e-90 AT3G13225 220 / 1e-59 WW domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain
Representative CDS sequence Show only first row Show all	>Lus10005845 pacid=23160125 polypeptide=Lus10005845 locus=Lus10005845.g ID=Lus10005845.BGIv1.0 annot-version=v1.0 ATGGGAAAGAGAAAAGAGCGTCGCCTTGCTGCTTTAGGCAACTCCAACCGTCGCGTTAAGCTCGACCTCTTCGCGGAACCCTCTGGAGACTTGGGTGGCT CCTCCCTACATGATGAAGTTGAAGGGAATGGTGATCCGACACAACGTGCTGGATTGCCCACTTCACCATCATCTTCAGATCAGCAGCCACAAAATCCTCT TCTTTTACTTGGGCAATACAATGATGATGAATTGGACGACGAGAAAAATCAGGATCTAAACCATGGAACTATTGACAGTTTGTCAGCTGCTCTTACTAAG CAGGATATACATCCTGCTGATGGAAATGAAAAAGATAGCAATGGAGTTGTAGAGCCTGCCATTCAATCTGACGAACAGCAGGATATGGATGGGGACTCTA TAGCAGTTGATGCTGCAGAGAGTGTGAAACAAGGAGAAAGTAAGGATTCTGATACTACTGCTTATGCTGACACGAGCAAGCCATTAATGTTGGCCGAAAA AGCATCTGTAGGTGGAGCTTCCACTCCACTAGTCGCCGGAGATGTGATTTTGGGCTGGATGATGGTGGTACATGACGAGACTAATCAATACTATTACTGG AACACTGAAACTGGCGAGACTTCATGGGAAGTGCCCATTGCTTTGGCTCAAATGGGATACACATTGAATCACCAGACATCTGTTGCTGAAAGTACGAGTC TTCCAGTGAGTGAAAGCTATAACAATTCAATAGCTGATGTGGGAGGCATTTCTTTCCCAGTATCAACTGTGGATAGCTCGACAGTTGTCAGTTATGTTTC TTCCAGTGAAGGGGCACATGGCAGTATGCGAGAATTGTATGCATCTTATCAACAGGTTGAAAATGAACCCCTGAAGGATGAAAGATTTGCAACACATTCA CAACAAAATGAGCTGGAGAGCAACACCATTTCAGTTCATGCGCAATTGGGTGATGTGAATTCTGTTCAAGATGAGCCTATTCCTGTTGCAGGATCTTCCC ATATCCAGAATGAAAGGACTGATAGTTCCAGTAGTCTGAGTACTCATTGTCAATGCTTATTGGAGAGGGTGAAGTCCCTTACAGGGTTTGAGAGACCTCC CCAAGATCGTGAACGAATATTTAAGTATATCTCTGAAGTAGAGACTAGACTTTTTGACATCGAGTCTCTTTCATCTTATGGTTTGTCGATGCTCCCATTC TGGATGCATTCACAAGGAAGACTTAAACAATTAGAAGATACAATCAACAATGAAATTTACCAACTTGCGGTATCTGCTCAATTGGATTATGATTTTGATA AAAGTATCGTTTCCTGTGAAGCAAAGGGAGAAAAACAAAATGGATTGTTTCGTGGATCTCTATTAGATGGACCAGGAAACAGTAAGCAAGGTGCTTCTTT TGATGCAAAGAACAGTTCCCATAATGAAGGTGCATCTGGATCTGTTGCATTCGATGTCCATGTTTCCCCTTCTATTGAATCTGCTAAGCTCCCGGAAAAT GCAACAATGAGTGCAGAGCGAAATGAGACTGCTAACTTTAAGTCGGACTCAGTCAGCATCGAGGATGTTGATATGGATATTGACATGGAAGTTGAAGATG TTCCTACAAACACAACTACCTCTGAAAATGTTCATCACTCAAACTCTGCTCCAGCTCAGCAATCAATTCCTTCAAATCTACCTGCAGAATTGCCATCCCT TGTTGCAGGGGAATCATCAGCTGTTCCTCTTCCAGAAGAATGGATTCATCCTCCACCGCCTGATACTGAACTTGTTCCTCCACCTCCTCCTGATGATGAC TTTGTTCCTCCACTGCCTCTTGATGAGCCTCCTGATTCCTCCTATTCCATGCTTCCCTGCTCTGGACAGATGGTTCAACCTATGTCTTATACTGAACACT ACGGTTTTGCTTATGTGGATCCTAGTTCCAAATATTACTGTTCTGCAGCTAATTTTCCAAGTGGCTATGTACATATTGATGGAAGTCAAGCTGCTATACC ACAAGCATCACTATATTATGGGCCTGTTTCAACCACGTACTCTGAAACACCGCCTGTTGAGCAAGTAGCATCTTATGACCTCCAAACGGTGCCTCCTGGA ACTCTTGTTACGGGGTTAGAGTCTTCAAACTTGCCAACTAATTTTGGCACTGTGCAATCTGATTCCAGTCATGGTCTCGATACCACTGGATCAGTAAACG CAGGATCACATCTGAAGCCCGAGTCTTTAGCTGTTGGTATTCAAATTGATTCAGGACACGTGCAGCCTTCTTCCAACATGAACAATCAAGCTCCTGATCT AAGCAGTAATAAAGGGACTGTATCTGCAGCTGCCTCTGCTCCTTCATCAAATGCTAAGGTCCAATCTAAAGTTTCTCGTGGTAAGAAGCGGACTGTTGCC GTTGCAACCTCCTTGAGATCTAATAAGAAAGTGTCAAGTTTGGTTGACAAGTGGAAAGCAGTGAAAGAGGAGATGCATGAAGACGAGGAAGATGAACCGG AAAATACACTTGAGATCTTGGAGAAGAAACGGCAAAAAGAAATTGAGGCATGGCGTGCTAAGCAAATTACTACTGGAGAGGCAAAGGACAATGCAAATTT TCAACCTCTGGGTGGTGATTGTTCAAAGAATCCCGGGATTGCATCCAAAAAGGACCCCCCACAACCCATCTACGTGCGCGAGAAAGTGAAGCGGAGACGG GCGCTTGCAGCCAAAGAAGAAGATGGGAAAAAACAGGCTGAGGCAGGCGATGATGCAAAGCCAAAGAAACCTGACTTAGCACAACTATCGAGAGGGCTAC CTTCTTGTTGGCTGGTGTATTGGGATGAAGCATCGAAGCAGGTTTATTATGGGAATGCAATTACTTCGGAGACGTCCTGGACCAGACCACCAAAATCATA A
AA sequence Show only first row Show all	>Lus10005845 pacid=23160125 polypeptide=Lus10005845 locus=Lus10005845.g ID=Lus10005845.BGIv1.0 annot-version=v1.0 MGKRKERRLAALGNSNRRVKLDLFAEPSGDLGGSSLHDEVEGNGDPTQRAGLPTSPSSSDQQPQNPLLLLGQYNDDELDDEKNQDLNHGTIDSLSAALTK QDIHPADGNEKDSNGVVEPAIQSDEQQDMDGDSIAVDAAESVKQGESKDSDTTAYADTSKPLMLAEKASVGGASTPLVAGDVILGWMMVVHDETNQYYYW NTETGETSWEVPIALAQMGYTLNHQTSVAESTSLPVSESYNNSIADVGGISFPVSTVDSSTVVSYVSSSEGAHGSMRELYASYQQVENEPLKDERFATHS QQNELESNTISVHAQLGDVNSVQDEPIPVAGSSHIQNERTDSSSSLSTHCQCLLERVKSLTGFERPPQDRERIFKYISEVETRLFDIESLSSYGLSMLPF WMHSQGRLKQLEDTINNEIYQLAVSAQLDYDFDKSIVSCEAKGEKQNGLFRGSLLDGPGNSKQGASFDAKNSSHNEGASGSVAFDVHVSPSIESAKLPEN ATMSAERNETANFKSDSVSIEDVDMDIDMEVEDVPTNTTTSENVHHSNSAPAQQSIPSNLPAELPSLVAGESSAVPLPEEWIHPPPPDTELVPPPPPDDD FVPPLPLDEPPDSSYSMLPCSGQMVQPMSYTEHYGFAYVDPSSKYYCSAANFPSGYVHIDGSQAAIPQASLYYGPVSTTYSETPPVEQVASYDLQTVPPG TLVTGLESSNLPTNFGTVQSDSSHGLDTTGSVNAGSHLKPESLAVGIQIDSGHVQPSSNMNNQAPDLSSNKGTVSAAASAPSSNAKVQSKVSRGKKRTVA VATSLRSNKKVSSLVDKWKAVKEEMHEDEEDEPENTLEILEKKRQKEIEAWRAKQITTGEAKDNANFQPLGGDCSKNPGIASKKDPPQPIYVREKVKRRR ALAAKEEDGKKQAEAGDDAKPKKPDLAQLSRGLPSCWLVYWDEASKQVYYGNAITSETSWTRPPKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	0	1
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	2.2	0.9314
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	5.0	0.8961
AT1G02080			transcription regulators (.1.2...		Lus10042876 [exp]	7.1	0.9100
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	7.2	0.8981
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	7.3	0.8892
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	7.7	0.8997
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	9.0	0.8743
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	10.5	0.8773
AT5G49880			mitotic checkpoint family prot...		Lus10007439 [exp]	11.0	0.8818
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	11.4	0.8883

Compare expression of checked genes

Lus10005845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.