Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26540 333 / 1e-104 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 330 / 2e-104 Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G24240 260 / 1e-77 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 224 / 8e-65 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 178 / 5e-49 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 163 / 7e-44 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G33170 162 / 2e-43 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G08590 160 / 6e-43 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 160 / 7e-43 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 157 / 6e-42 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032954 [exp] 494 / 4e-166 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011756 [exp] 236 / 6e-69 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 228 / 3e-66 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028612 [exp] 198 / 6e-56 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 198 / 7e-56 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10000509 [exp] 186 / 1e-51 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 186 / 2e-51 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10007543 [exp] 162 / 6e-44 AT2G41820 1130 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012193 [exp] 161 / 4e-43 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164800 [exp] 380 / 1e-122 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 362 / 9e-116 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 254 / 1e-75 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G175700 [exp] 247 / 4e-73 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 231 / 2e-67 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.015G080800 [exp] 224 / 3e-65 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G188700 [exp] 224 / 6e-65 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 209 / 1e-59 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.T124308 [exp] 189 / 2e-54 AT5G56040 454 / 5e-149 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G198000 [exp] 193 / 4e-54 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10005847 pacid=23160120 polypeptide=Lus10005847 locus=Lus10005847.g ID=Lus10005847.BGIv1.0 annot-version=v1.0 ATGCTCAACAAGCTTCAAACTTTAGCCATTTACACTTCCTTACTCTCAGGTCCAATCCCTGAACAAATTGGTAACTGTACCCAGCTTCAGAATCTGTTTC TTTACCAGAATTCCATCTCTGGGTCAATCCCTACGCAAATTGGGCAGCTCGGGAAGCTCCAGAGCTTGCTTCTATGGCAGAATAGCTTAGTGGGTTCCAT CCCAGATGTCAGAAATGGAGAGTGTGATAGACAGAGAGAAATGGGTGATGAAGGAAAAAGAAAAAAGAACAGTCTGACCGGGACAGTTCTGGAGTCGATT TCCGACTGTCGGAATCTCCAGGCGCTTGATCTTTCCTACAACAACCTTTTCGGGTCAATTCCTTATCGGATTTTTGCGCTTCAGAATCTCACTAAGCTCC TCCTTTCCAACGAATTTTCCGGGTTTATTCCGCCTGGTATCGGGAATTGCTCAAGCTTGTACAGGGAAAGGCTGAACGGGAACAGGTTAGACGGCGCTAT TCCGTCGGGGATCGGGAGCTTGAAGGAATTGAATTTCCTCGACCTGAGCAGCAACCGGCTCGTCGGAGAAATCCCTCCGGCGGTCTCCGGGTGTCAAAGC CTTGAATTTCTCTATCTCCATTCCAATGGGATCGCCAGTTCACTTCCCGAGACTCTGCCTCCAAGCTTGCAATTGTTCAAGTTACAGCTCCTCAACTTGG GAGACAACCACCTCTCCGGCGAGATCCCAAAAGAAATCGGCCAGATCCCGGCGCTGGAAATCTCGCTCAACCTGAGCTGCAACCAATTCTCCGGCGAGAT TCCGTCCCAATTCTCGGGACTCAACAAATTAGCCGTCCTCGACCTCTCCCATAACGCTCTGAAAGGAAACCTTGACGCCTTGGAAGCAGGGTTTCAGAAC CTCGTTTCCCTCAACATCTCTTCCAACGAATTCTCCGGCGACCTATCCGACACTCCGTTCTTCCGGAAACTGCCCGTCGATGATTTCGCCTCGAATAAAG GCGGTGGAGAAACTTCCCCGGATAACCACGGCGCCAGTGGGAGGTCGGCGACGAAGCTGCTTATCTCTGTTCTTCTAAATGCGAGTGCGGTACTTATTCT TCTGGCAATCTTTGCCTTGGTTCGCGGGCGGGTTAGCTATGCGGCTGACGAGTCAATGATGATGAAGATGGAAGGCATAAACGGTCATTGA
AA sequence Show only first row Show all	>Lus10005847 pacid=23160120 polypeptide=Lus10005847 locus=Lus10005847.g ID=Lus10005847.BGIv1.0 annot-version=v1.0 MLNKLQTLAIYTSLLSGPIPEQIGNCTQLQNLFLYQNSISGSIPTQIGQLGKLQSLLLWQNSLVGSIPDVRNGECDRQREMGDEGKRKKNSLTGTVLESI SDCRNLQALDLSYNNLFGSIPYRIFALQNLTKLLLSNEFSGFIPPGIGNCSSLYRERLNGNRLDGAIPSGIGSLKELNFLDLSSNRLVGEIPPAVSGCQS LEFLYLHSNGIASSLPETLPPSLQLFKLQLLNLGDNHLSGEIPKEIGQIPALEISLNLSCNQFSGEIPSQFSGLNKLAVLDLSHNALKGNLDALEAGFQN LVSLNISSNEFSGDLSDTPFFRKLPVDDFASNKGGGETSPDNHGASGRSATKLLISVLLNASAVLILLAIFALVRGRVSYAADESMMMKMEGINGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56040			Leucine-rich receptor-like pro...		Lus10005847 [exp]	0	1
AT4G26540			Leucine-rich repeat receptor-l...		Lus10005848 [exp]	1.0	0.8630
AT4G13990			Exostosin family protein (.1)		Lus10001028 [exp]	7.3	0.7759
AT3G48340		CEP2	cysteine endopeptidase 2, Cyst...		Lus10033631 [exp]	16.4	0.8221
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	17.5	0.8087
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	23.7	0.8094
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	24.8	0.8001
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	30.3	0.8154
AT5G43210			Excinuclease ABC, C subunit, N...		Lus10016370 [exp]	31.3	0.8104
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	33.5	0.8120
					Lus10006286 [exp]	34.3	0.7882

Compare expression of checked genes

Lus10005847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.