Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26530 261 / 5e-88 Aldolase superfamily protein (.1.2) AT2G36460 235 / 6e-79 Aldolase superfamily protein (.1.2) AT4G26520 237 / 1e-78 Aldolase superfamily protein (.1) AT3G52930 231 / 2e-76 Aldolase superfamily protein (.1) AT5G03690 220 / 5e-72 Aldolase superfamily protein (.1.2) AT2G21330 167 / 7e-51 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G38970 167 / 8e-51 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G01140 155 / 3e-46 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032956 [exp] 317 / 5e-110 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10014373 [exp] 236 / 3e-78 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 236 / 3e-78 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 229 / 3e-75 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1) Lus10035571 [exp] 227 / 2e-74 AT5G03690 604 / 0.0 Aldolase superfamily protein (.1.2) Lus10034619 [exp] 164 / 1e-48 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10035473 [exp] 153 / 2e-45 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10031088 [exp] 152 / 5e-45 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10007940 [exp] 120 / 2e-33 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165000 [exp] 259 / 2e-87 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.001G468100 [exp] 259 / 4e-87 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.018G090100 [exp] 237 / 1e-78 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 235 / 5e-78 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2) Potri.007G015500 [exp] 170 / 3e-52 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.009G124100 [exp] 165 / 3e-50 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 165 / 4e-50 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.010G117900 [exp] 160 / 2e-48 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.008G125900 [exp] 160 / 3e-48 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10005850 pacid=23160124 polypeptide=Lus10005850 locus=Lus10005850.g ID=Lus10005850.BGIv1.0 annot-version=v1.0 ATGGTGCTGGCTGCGGTGTACAAGGCGCTCAATGAACAACATGTTCTCCTTGAGGGTACTCTCCTCAAGCCTAACATGGTTACTCCTGGCTCTGACTCCC CCAAGGTGACAGCAGAGGAGATAGCAGAGTACACGGTGAGGGCACTAAGGAGGACAGTTCCGCCGGCAGTGCCAGGGATAGTATTCCTATCAGGGGGACA GAGTGAAGAGCAAGCAACTTTGAACCTAAACGCAATGAACAAGCTGCAAGTGCTGAAGCCATGGACGCTGTCCTTCTCGTTCGGCCGAGCACTCCAGCAA AGCACACTCAAGACATGGGGCGGCAAGAAAGACAATGTTGAGAAAGCACAAGCTGCTTTCCTGGAGAGATGCAAGGCCAATTCTGACGCCACCCTCGGTA AGTACGCCGGTGGATCCGACGCTACCGGCTTGGCCTCCGAGAGCTTGTATGTCAAGGCCTACAACTACTAG
AA sequence Show only first row Show all	>Lus10005850 pacid=23160124 polypeptide=Lus10005850 locus=Lus10005850.g ID=Lus10005850.BGIv1.0 annot-version=v1.0 MVLAAVYKALNEQHVLLEGTLLKPNMVTPGSDSPKVTAEEIAEYTVRALRRTVPPAVPGIVFLSGGQSEEQATLNLNAMNKLQVLKPWTLSFSFGRALQQ STLKTWGGKKDNVEKAQAAFLERCKANSDATLGKYAGGSDATGLASESLYVKAYNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	0	1
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	1.0	0.9794
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	2.4	0.9512
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	2.8	0.9327
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	3.5	0.9303
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	6.0	0.9131
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	6.3	0.9256
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	7.4	0.9311
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	8.5	0.9329
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	9.5	0.9129
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	9.5	0.9243

Compare expression of checked genes

Lus10005850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.