Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25480 175 / 1e-53 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G01050 89 / 1e-19 TROL thylakoid rhodanese-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001215 [exp] 398 / 1e-140 AT3G25480 208 / 2e-66 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10005947 [exp] 74 / 1e-14 AT4G01050 415 / 1e-141 thylakoid rhodanese-like (.1) Lus10029448 [exp] 74 / 2e-14 AT4G01050 404 / 2e-138 thylakoid rhodanese-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239800 [exp] 237 / 1e-76 AT3G25480 251 / 2e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.002G169100 [exp] 77 / 7e-16 AT4G01050 400 / 1e-136 thylakoid rhodanese-like (.1) Potri.014G096500 [exp] 75 / 5e-15 AT4G01050 388 / 5e-132 thylakoid rhodanese-like (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005853 pacid=23176914 polypeptide=Lus10005853 locus=Lus10005853.g ID=Lus10005853.BGIv1.0 annot-version=v1.0 ATGGTCCTATCTATCCACATTCCTGATTCCTCCGCCGCTGTTTCTTCCCCGTCGACCATGAAAGCCCTAATTCTCTCTTCTTCTCCTCCACCTCTTCCCC AAATCCACAACCCTAAACCACCGAATTCCCCCAAATCGCCACCAAATCATTTCAATCCTCTCTTCAGAAACTCGTCCCTTTCCATTTCCCTTTCATCCAT CCACCTCTCATCTTCAATCCCTCCTTGTTTAGCTTCCGAGTCCCTAATCCCCTCGCCAGCTGAATACTCCGACAAAATCAACTTGGAAGCCATCCTCGTC TCAATCGACGACTTCTTCACCGCCAATCCCTTCTTCGTATCCGGATGCCTCTTCCTCTGGCTGGTCGTCATTCCGTTCGGCCAGCGGTATTTGAGGAGGT ACATGTTTATCTCCGCAATCGACTCGTTCCGGAAGCTGAGAGATGATCCCAATGTGCAGCTTCTGGATATCAGAGATGAAGAGAGCGTCGCTGGTCTTTG CTCTCCTAACTTGAAGATGCTGGGTAAGCGGGTCGGGTGCGTTGAGTTTGATAAGGATGATGGAGATCGATTTGTGAAGAATGTGTTGAGTTTGTTTCCT GATCCTCAGAACACTGTCCTCTGCGTCCTGGACAATGTTGATGATAATTCGTTGCAAGCAGCAGAGTTATTAGTGAAGAATGGATTCAAAAGGGCCTATG CAGTGAAGGGTGGAGTCAGAGGCAAGAAAGGATGGGTGTCGATACAGAAAACAATGTTGCCACCTTCGGTCAGTATGCTGCGAAACAGGGCTAAAGTCTC GGAACCGGGAAGCAGAGGAGGAACTAGGGATGAAAACAACAATGAGAAGAGTGTTGATGCAGCAGCTTCTGCTACGTCCACAAGTTAA
AA sequence Show only first row Show all	>Lus10005853 pacid=23176914 polypeptide=Lus10005853 locus=Lus10005853.g ID=Lus10005853.BGIv1.0 annot-version=v1.0 MVLSIHIPDSSAAVSSPSTMKALILSSSPPPLPQIHNPKPPNSPKSPPNHFNPLFRNSSLSISLSSIHLSSSIPPCLASESLIPSPAEYSDKINLEAILV SIDDFFTANPFFVSGCLFLWLVVIPFGQRYLRRYMFISAIDSFRKLRDDPNVQLLDIRDEESVAGLCSPNLKMLGKRVGCVEFDKDDGDRFVKNVLSLFP DPQNTVLCVLDNVDDNSLQAAELLVKNGFKRAYAVKGGVRGKKGWVSIQKTMLPPSVSMLRNRAKVSEPGSRGGTRDENNNEKSVDAAASATSTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	0	1
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	2.0	0.9385
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	2.0	0.9387
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	2.4	0.9534
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031710 [exp]	3.5	0.9346
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	11.2	0.9177
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	12.0	0.9386
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	12.4	0.9117
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	12.5	0.9031
AT5G42765			unknown protein		Lus10032714 [exp]	12.6	0.9299
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	14.4	0.9175

Compare expression of checked genes

Lus10005853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.