Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33770 764 / 0 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT2G16920 369 / 3e-112 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT1G53025 269 / 2e-80 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 259 / 7e-76 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 240 / 2e-72 Ubiquitin-conjugating enzyme family protein (.1) AT5G41700 62 / 5e-11 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 59 / 2e-10 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT4G27960 59 / 4e-10 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT3G08690 59 / 5e-10 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G64230 59 / 5e-10 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001214 [exp] 1026 / 0 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10025070 [exp] 372 / 4e-114 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10034472 [exp] 367 / 8e-114 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10028151 [exp] 268 / 4e-80 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10039831 [exp] 256 / 3e-76 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10018596 [exp] 249 / 6e-74 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10042852 [exp] 230 / 2e-66 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10037778 [exp] 213 / 5e-62 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10016921 [exp] 201 / 3e-58 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052600 [exp] 979 / 0 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 909 / 0 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.009G136000 [exp] 307 / 1e-89 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G176000 [exp] 299 / 1e-86 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.011G118800 [exp] 280 / 3e-83 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 276 / 7e-82 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 265 / 5e-79 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.010G146500 [exp] 250 / 3e-75 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 248 / 2e-74 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G108500 [exp] 129 / 8e-33 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10005854 pacid=23176932 polypeptide=Lus10005854 locus=Lus10005854.g ID=Lus10005854.BGIv1.0 annot-version=v1.0 ATGGATGTGTTTCACAGCGACTCTGATTGGGAGAATTCAAGTGACAGCAGCAGCGAGGACATGGATGAACTCGAGCTCGAATACAGTGGACAAGCACGGA GCATTCTGTCATGCCTTGACGAAAGCATTGGAAAGATTGATGATTTCCTTTCATTTGAAACCGGCTTCGCTCGTGGAGACATTGTTAGCTCCGTAACAGA TTCATCGGTACAGACAGGCAAAGTTGTGAGCGTCCACATCTCTGTGGACCTGGAAACTCCGCATGGAAAAATCTTAAAAAGCGTGGACTCCACCAAGATC TCGAGGATTTGCTCGATCACAGTGGGAGACCACGTGGTTCAAGGGCCATGGATTGGACGGGTGGTCAAAGTTGTTGACCGCATCACTGTGTTATTTGACG ATGGAACGAGCTGTGAGGTGGATGAAACGGACAAGGAAAAGCGGTTGTTGCCAATCCTTCCGAACTTACTCGAAGATCCATCGTATCCGTTTTATCCGGG ACAGAGAGTACAGGTTAGGCTCTCAACTGCTTGTCGATCAGCTCGATGGTTGTGTGGTTCGTGGAAGGATAATCAGGATATAGGAACCATCTCTGCTGTT AAACCAGGCATTGTGTATGTTGACTGGCTTGCAAATGTTCTCGTTGGTTGTGATACTACCCCTCCTGCGCCAACTACGTGTCTTCAGGATGCAAATGATT TGGTCATGTTACCGATGTTTCTACACGAAAGTTGGCAACTTGGAGACTGGTGTACACTTTCTACAGCTAATGCAGAAAACCATCTCCAAGAAATATTCGT CATTGCAAAAACTAAGACTGTAGTTGATGTTGTGTGGCAGGATGGTACCTGTTCCTCTGGCTTACGTTCACAATCACTACTCCCTGTAAATGTTGTTAAT GCTCATGAGTTCTGGCCAGGGCAGTTTGTACGTGAAAAAAGTACGACTGATGACGATGATGGGCCACTCGTTTCTGGAAACCAAAAATGGGGGGTTGTGA CTGCTGTGGATGCAAAGGAACACACGGTCAAGGTAAAATGGAACTCTATCTTGGAATCAACTGATCTGGAAAGGGTGGAAGAAACAGTGAGTGCATATGA ACTAGTTGAGCATCCGGATTATTCCTACTGTTTCAGAGATATTGTCTTCAAAGGTCAGACTGGTGCTCCTAAAGACAAAGATCAGATCAGTTATCGTTCG AAAGATTACATGTCGTGCATTGGATACGTTTCTGGATTCAAAGATGGTACAGTTGAAGTGAACTGGGCTTCCGGGCTTGCTACTAATGTTGCTCCCAATG AAATTTTCCGAGTTGAGAAACAAGACGGTTCATCTCCTACTCCCTTGCAAGAAGATGTCGAAGAGGAACTAAGCCAAGTGGCGGTTGACCGTGGCAAAAA ATTTGTTACACTGAGTCCAGATCTTTGGGAATGTAGCTCCTCTTTTGATCATCAGTCAACCTTTGGAATCTTGACAAGCATAGCGGCACGGGTACTCGGA TCTTTCAGTTACTCATCAGTGTCTAACCTTGACTGTGTTCATGAAGATGAAGGTGAACTTGAACAATCCGAAACTTGTGGTATGTCCACAGAGATGAAAC CTCTGGCGGCAGTTGAGATGCAGAGATTTGATGAGGCTAGCTTAGAACAGGAAGTTGATGGACTTGAGGAGAATAATAAAGGACTTAGAAGCTTGTCTGC AGTTACAAAGAGTGGGGAACTGTTTGCGAAATTCGATATGGTCAACGATTGTTCGGACCATCACTTTGTCGATGGAGCAGGCAAAGGATTGGCAATGTCT CAGGTCAAAAGAACTTGGTTGAAGAGGTTGCAGCCGGAATGGAGTAGCCTAGCAGAAGATCTACCTGAATCGATCTATGTACGCGTGTATGAGGAGAGAA TCGATCTTGTTCGAGCAGCCATCATTGGAGCGCCTGGAACTCCATATCACAATGGCTTATTCTTCTTTGACATTTATCTCCCTCCTCAGTATCCTTATGA ACCACCTGTAGTGCATTATCGATCTGGTGGGCTCCGGCTCAACCCGAATTTGTACGAATCAGGGAAGATCTGCCTCAGTCTCTTGAACACATGGACTGGC ACCGGCAGCGAAGTATGGAATCCGGAGAGCTCTAGCATTCTTCAAGTCCTTCTCTCCCTCCAGGCTCTTGTCCTCAACGAAAAACCGTATTTCAACGAGG CTGGCTACGACAATCAGGTTGGTAAAGCGGAGGGAGAGAAGAACTCAATAAGCTACAATGAAAACGCCTTCCTCGTTACCTGGAAGTCCATGCTTTACTT GCTCCGCAAGCCACCAAAGCATTTCGAGCCACTTGTCGAGCAGCACATCAAGCTGCGTTCAAACGACATTCTTGCGGCCTGCAAGGCGTACATGGATGGA GCTCCCATCGCAAGAGATGAGGAAGAAACTTCGAAGGGGAGCTCTGATGGGTTCAAGATCATGCTTGCTAAGCTCTTGCCAAAACTTGTCGAAGCCTTTT CGAGCAAAGGGATTGACTGCGGCCACAGGGATGAAGTTCAAGGGTCATGA
AA sequence Show only first row Show all	>Lus10005854 pacid=23176932 polypeptide=Lus10005854 locus=Lus10005854.g ID=Lus10005854.BGIv1.0 annot-version=v1.0 MDVFHSDSDWENSSDSSSEDMDELELEYSGQARSILSCLDESIGKIDDFLSFETGFARGDIVSSVTDSSVQTGKVVSVHISVDLETPHGKILKSVDSTKI SRICSITVGDHVVQGPWIGRVVKVVDRITVLFDDGTSCEVDETDKEKRLLPILPNLLEDPSYPFYPGQRVQVRLSTACRSARWLCGSWKDNQDIGTISAV KPGIVYVDWLANVLVGCDTTPPAPTTCLQDANDLVMLPMFLHESWQLGDWCTLSTANAENHLQEIFVIAKTKTVVDVVWQDGTCSSGLRSQSLLPVNVVN AHEFWPGQFVREKSTTDDDDGPLVSGNQKWGVVTAVDAKEHTVKVKWNSILESTDLERVEETVSAYELVEHPDYSYCFRDIVFKGQTGAPKDKDQISYRS KDYMSCIGYVSGFKDGTVEVNWASGLATNVAPNEIFRVEKQDGSSPTPLQEDVEEELSQVAVDRGKKFVTLSPDLWECSSSFDHQSTFGILTSIAARVLG SFSYSSVSNLDCVHEDEGELEQSETCGMSTEMKPLAAVEMQRFDEASLEQEVDGLEENNKGLRSLSAVTKSGELFAKFDMVNDCSDHHFVDGAGKGLAMS QVKRTWLKRLQPEWSSLAEDLPESIYVRVYEERIDLVRAAIIGAPGTPYHNGLFFFDIYLPPQYPYEPPVVHYRSGGLRLNPNLYESGKICLSLLNTWTG TGSEVWNPESSSILQVLLSLQALVLNEKPYFNEAGYDNQVGKAEGEKNSISYNENAFLVTWKSMLYLLRKPPKHFEPLVEQHIKLRSNDILAACKAYMDG APIARDEEETSKGSSDGFKIMLAKLLPKLVEAFSSKGIDCGHRDEVQGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10005854 [exp]	0	1
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	2.8	0.9451
AT2G33793			unknown protein		Lus10011183 [exp]	4.6	0.9449
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	7.1	0.9500
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000958 [exp]	14.8	0.8899
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	18.7	0.9405
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022838 [exp]	22.0	0.9313
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	22.3	0.9375
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	22.7	0.9445
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028220 [exp]	23.2	0.9336
AT5G47530			Auxin-responsive family protei...		Lus10010498 [exp]	27.5	0.9115

Compare expression of checked genes

Lus10005854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.