Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21705 503 / 6e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 254 / 1e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G01990 250 / 3e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 237 / 3e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 233 / 3e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 229 / 1e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 217 / 4e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 213 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 193 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 171 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001213 [exp] 967 / 0 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 851 / 0 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 432 / 1e-147 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 261 / 4e-81 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 253 / 5e-78 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 247 / 2e-75 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042574 [exp] 231 / 3e-69 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016229 [exp] 215 / 9e-65 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009787 [exp] 218 / 3e-64 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042500 [exp] 610 / 0 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 586 / 0 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 509 / 3e-178 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 292 / 1e-93 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 284 / 5e-90 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 271 / 3e-85 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 264 / 4e-82 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 257 / 2e-80 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G079600 [exp] 249 / 5e-77 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 249 / 6e-77 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005855 pacid=23176905 polypeptide=Lus10005855 locus=Lus10005855.g ID=Lus10005855.BGIv1.0 annot-version=v1.0 ATGAACTCCAAGCTAGTTTTCAGAGCTCTAACGCAAGCTCAGAATTCCATCATCTCACGATCCTATCACGTCGCCAAAGGAGACAGAACAACTCTCTATT GGAAGATTAGCCCCCTCGGGAATCCAGGGAACAGCGTCTCAGCTGTGCTCGATGAATGGATCAAGTCCGGCCAAAATGTCAGGTTCACTGAGCTCCAGCG GATCATTCAAGATCTCCGTAAGAGAAGGCGATTCTCTCAGGCTTTAGAGGTTTCTGAATGGATGAGTAAATCGGGGACTGTAGTATGCTCGCCAGCTGAA CATGCGATCCGGATCGATCTGATAGGGAAGGTTAAGGGATTCGAGTCTGCGGAGGATTATTTCAACAGTCTTAGGGACATTGATAAAACTCACAAGACCT ATGGAGCTCTGCTCAATTGCTACGTTCGTCAGAAGCAGATGGATAAGTCGATTTCCCACATGCAGAAAATGAAGGAACTTGGGTTTGCTTCGTCACCCAT CGCTTACAACAACATTATGTGTCTATACACTAATCTCGGCCAGCATGAGAAGGTACCTTCCGTGTTAGCCGAGATGAAGGCTAGCAATGTCTCCCCGGAC AACTACAGCTACAGGATCTGCATCACATCTTACGGTGTAAGATCCGAAATCGAGGAAATGGACAAGATTCTGCATGAGATGGAACAGCAATCCGACATAG TGATGGATTGGAATACTTACACCGTAGTTGCCAACTTCTACATCAAAGCCGGTCTTCGTGAGAAAGCTATGGAAGCTTTGAAGAATGCGGAGGAGGTACT CGAATGGAAAGACGGTACCGGGTTTAACCATCTGATATCACTGAATGCAGCTCTGGGGAATGTCGATGAAGTATTGAGATTGTGGAAACTGGAGAAAGCT CGATGTAAAAGGTGCATCAACAAAGATTACATCGTTGTCTTGGAATCGCTGATGAAGCTCAAGGAGGTGGGCCATGCCGAGAAGGTCTTGAAGGAATGGG AATCAAGTGGGAACTGTCACGATTTCAGCGTTCCGAATGTGGTGGTGATCGGGTATGTCCAGCAAGGGATTCTGGAGAAAGCCGAGGCTCTGGTTCGAGA GTCCATGAAGAAAGGGATGGCTGTGACTCCAAACAGTTTGGCCACGGTTGCAAAGGGATACCTTGATAGAGGTGATGAGATGAGGAAAGGGTGTGAATTG ATGCAGGCTGCCCTTGTTCGGTGCGTTGCAAACAAAGGATGGAAGCCGAATCCCAGGGTGATAACCGACATCCTGAATTGGCTTGGCGATGAAGGCACGG TCGAGGAAGCGAAAGCCTTCGTTGAGGCGATGAAGACTATTGTTCCATCGAGCAGGGGAATGTATCATGCCATTTTGAAGGCTTGCAGAAGGAATGGTGC AGAAGTCGAAACGATCTTGCGAGCTATGGATGCCGATGGGATTGATCAAAATGAACGAACCCAGAAGATCCTTGGGAAGAAACTCGATTGA
AA sequence Show only first row Show all	>Lus10005855 pacid=23176905 polypeptide=Lus10005855 locus=Lus10005855.g ID=Lus10005855.BGIv1.0 annot-version=v1.0 MNSKLVFRALTQAQNSIISRSYHVAKGDRTTLYWKISPLGNPGNSVSAVLDEWIKSGQNVRFTELQRIIQDLRKRRRFSQALEVSEWMSKSGTVVCSPAE HAIRIDLIGKVKGFESAEDYFNSLRDIDKTHKTYGALLNCYVRQKQMDKSISHMQKMKELGFASSPIAYNNIMCLYTNLGQHEKVPSVLAEMKASNVSPD NYSYRICITSYGVRSEIEEMDKILHEMEQQSDIVMDWNTYTVVANFYIKAGLREKAMEALKNAEEVLEWKDGTGFNHLISLNAALGNVDEVLRLWKLEKA RCKRCINKDYIVVLESLMKLKEVGHAEKVLKEWESSGNCHDFSVPNVVVIGYVQQGILEKAEALVRESMKKGMAVTPNSLATVAKGYLDRGDEMRKGCEL MQAALVRCVANKGWKPNPRVITDILNWLGDEGTVEEAKAFVEAMKTIVPSSRGMYHAILKACRRNGAEVETILRAMDADGIDQNERTQKILGKKLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	0	1
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	1.4	0.9347
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	1.4	0.9158
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	3.5	0.9035
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	3.5	0.9039
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	5.0	0.9034
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	6.0	0.8844
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10025418 [exp]	9.2	0.8761
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	9.9	0.8971
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	10.4	0.9016
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	11.3	0.8933

Compare expression of checked genes

Lus10005855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.