Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17020 271 / 2e-85 transcription factor-related (.1.2.3) AT3G09010 220 / 3e-66 Protein kinase superfamily protein (.1) AT1G16670 181 / 2e-51 Protein kinase superfamily protein (.1) AT1G53420 174 / 3e-46 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 168 / 2e-44 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 166 / 2e-43 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 165 / 3e-43 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 164 / 9e-43 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56130 163 / 1e-42 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 162 / 2e-42 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001212 [exp] 520 / 2e-179 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10012849 [exp] 338 / 6e-111 AT4G17020 711 / 0.0 transcription factor-related (.1.2.3) Lus10011193 [exp] 292 / 2e-94 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 293 / 2e-93 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10002494 [exp] 233 / 4e-71 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10004825 [exp] 201 / 6e-59 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10042460 [exp] 192 / 6e-56 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 190 / 7e-55 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042851 [exp] 168 / 1e-46 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049600 [exp] 321 / 1e-105 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.004G041600 [exp] 280 / 7e-89 AT4G17020 758 / 0.0 transcription factor-related (.1.2.3) Potri.004G040200 [exp] 261 / 2e-82 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 208 / 7e-62 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 189 / 4e-54 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 187 / 5e-54 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 185 / 2e-53 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 185 / 3e-53 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 182 / 6e-52 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.008G040800 [exp] 172 / 4e-49 AT1G16670 289 / 5e-96 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03849 [flax] [poplar] Tfb2 Transcription factor Tfb2 CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005856 pacid=23176935 polypeptide=Lus10005856 locus=Lus10005856.g ID=Lus10005856.BGIv1.0 annot-version=v1.0 ATGCCTCTAGTAAAGATAATTGCGAAGAACTTCATGGACATGGTGGCAGCTTTACCCGCCATGAAACTCGATGTTCTCTACGAGAACTCATTCATCTGCG AAGCCATTCTCAGGAGTGCAATCAAGGACCTTGCGGACTTGGGATTGGTTAACCTTCAAAAGGGCAGGAATGAAAGTTGGTTTATACCTACTAAATTGGC TACCAATTTATCGGTTAGCTTAGCTGATTCATCAACACGAAAACAGGGATTTCTTGTAGTGGAAACAAATTTTAAGATGTATGCATACTCAACATCTAGG TTGCACTGTGAAATTCTACGTCTTTTCTCACGGGTTGAGTATCAACTTCCTAACCTTATCGTGGCAGCAATCGCGAAGGAAAGCCTGTACAATGCTTTTG TAAACGGAATCACAGCAGAGCAGATAGTTTCCTTCATGCAGCAGAATGTTCATCCTCGTGTGGCGCAGAAACTACCAACAGTTCCGGAGAATGTCGCCGA TCAGATAAGGCTGTGGGAAACAGATCTCAATCGGGTCGAACCGACCATGGCTTACTTCTACGAGGATTTCCTATCTATGGATGTGTTTGAATCTGCTTGC GACTTGGCACGACAGTGTGGAGCAGTTTACTGTGGGATGATTCGGACAAAATGGGGCTGCAGCTGCTTTGGTGCTGCTAGGAAAGGCGCCGCTGCCGGAG GCATCTGGGCTCACCACGGCGTTGACGATGATCTGCTCCGGGATGTCAACCACATTGCATACAGTACACTTCGATCCGCTACAGACGATTTCGATATCAG AAGGAGGATCGGGAGAGGTGGCTTTGGAACAGTTTACAAGGGAACCCTGCCAAAGAATGGAAGAAAGATAGCTGTGAAAACTCTCTCTGTCCATTCAAAG CAAGGGGTGAAGGAGTTCTTGAACGAGATCAGGGCCATGTCGAAAGCGAAGCATCCAAATCTCGTGGAGTTGATAGGATGCTGTATTCATGGAGCTAATC GGATACTAGTCTACGAATTTGTCGAGAACAACAGTCTCTACAGTTGTTTGTTAGGTTCAAGAAATCGAAACGTAAAGCTAGACTGGGGGAAACGAGCTGC GATTTGCTTGGGGGTAGCTCGTGGTCTTGCTTATCTCCACGATGAGCTGGCGCCGCATATCGTTCATAGAGACATCAAGGCTAGCAATATACTCCTTGAC AAAGACTTCACCCCAAAAATCGGAGACTTTGGGCTTGCCAAGCTTTTCCCGGATGATATCACTCATATCACCACGACAACTGCAGGCACCACGTATGGAG GGCTTCTCGAGCTGGTCGATGGGGAGATGGGAGAATCGGTAGAGGAAGAAGCTGTCGTACGATATATGAAAGTAGCCTTCTTCTGTACTCAATCTATGGC GAACAGAAGACCATCGATGAGCCATGTCGTGGAAATGCTGTCTAAGAACATACCACTCAGAGATCAGCTACTCAGTCCACCTGGTTTCTTCCTGGAATCG GACCGGTTCAGTGAACCTGGGTCTGTAAATAATAAGAAGAATTATGCTCAATCGTCTTGCCGCCATAGTTCTGTTCCTGTTACAGTTACAGAAATCACTC CTAGATGA
AA sequence Show only first row Show all	>Lus10005856 pacid=23176935 polypeptide=Lus10005856 locus=Lus10005856.g ID=Lus10005856.BGIv1.0 annot-version=v1.0 MPLVKIIAKNFMDMVAALPAMKLDVLYENSFICEAILRSAIKDLADLGLVNLQKGRNESWFIPTKLATNLSVSLADSSTRKQGFLVVETNFKMYAYSTSR LHCEILRLFSRVEYQLPNLIVAAIAKESLYNAFVNGITAEQIVSFMQQNVHPRVAQKLPTVPENVADQIRLWETDLNRVEPTMAYFYEDFLSMDVFESAC DLARQCGAVYCGMIRTKWGCSCFGAARKGAAAGGIWAHHGVDDDLLRDVNHIAYSTLRSATDDFDIRRRIGRGGFGTVYKGTLPKNGRKIAVKTLSVHSK QGVKEFLNEIRAMSKAKHPNLVELIGCCIHGANRILVYEFVENNSLYSCLLGSRNRNVKLDWGKRAAICLGVARGLAYLHDELAPHIVHRDIKASNILLD KDFTPKIGDFGLAKLFPDDITHITTTTAGTTYGGLLELVDGEMGESVEEEAVVRYMKVAFFCTQSMANRRPSMSHVVEMLSKNIPLRDQLLSPPGFFLES DRFSEPGSVNNKKNYAQSSCRHSSVPVTVTEITPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09010			Protein kinase superfamily pro...		Lus10005856 [exp]	0	1
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	17.7	0.7455
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	18.5	0.7870
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	24.7	0.7782
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	34.6	0.7766
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10032308 [exp]	57.1	0.7598
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	105.7	0.7351
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	110.2	0.7392
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10018776 [exp]	127.2	0.7066
AT1G31130			unknown protein		Lus10018940 [exp]	128.0	0.7169
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	135.0	0.7152

Compare expression of checked genes

Lus10005856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.