Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11060 371 / 4e-114 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) AT1G61030 360 / 8e-111 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001211 [exp] 1220 / 0 AT1G11060 660 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10011196 [exp] 695 / 0 AT1G11060 614 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10018478 [exp] 692 / 0 AT1G11060 611 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039900 [exp] 744 / 0 AT1G11060 662 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Potri.011G049300 [exp] 712 / 0 AT1G11060 674 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07814 [flax] [poplar] WAPL Wings apart-like protein regulation of heterochromatin
Representative CDS sequence Show only first row Show all	>Lus10005857 pacid=23176927 polypeptide=Lus10005857 locus=Lus10005857.g ID=Lus10005857.BGIv1.0 annot-version=v1.0 ATGATTGTCAGGACGTACGGCCGCCGGAGCAGCAGAAGCTCATTTTCCGATTCCCTCGACGACGATGGAGATGGCGACAATTCGTTACTCGGAGGAGGAG GAGGAGATTCTTTCTCCCTCTCGCAAGAAACCCCGTCTCAGAGCTTCTACGATTTCCCTTTCTCCTCACAGGAATCCTCATCTTTCTGGCCTAGTTCTTC CCAGGACGATTTGCCACCTCGGCCAAGGAAGTCTAAGAAACCGAGAAATGGGAAGCTGGAGAAGCAGGAACGGCGGGCTTGGGTTCCTTTGACTTCTACG ACGTTGATGGAGGCGCAGGAATATGGGGAGATGATGGAGCACGTCGATGAGGTTAATTTCGCGCTGGATGGGCTGAGGAAAGGGCAGCATGTTAGGATCA GGAGGGCGAGCTTGCTGTCGCTTATGACAATTTGTGGCACGGGTCAGAAGCGGCGGCTTCTGAGGGCTCAAGGGACGGTGAAAACAATAATGGATGCAGT CTTGGGACTTACCTTTGATGATACTCCCAGCAATCTGGCAGCTGCGACTCTTTTCTATGTTTTAAGCAGCGATGGTCAAGATGATCAAATGTTAGAATCA CCCAGTTGCATTCGGTTTTTGCTTAAATTGTTAAAGCCGGTACCATCTGTGGCCACTGAGGAAAAAACTCGAAGTTTAGGCAGCAAACTAATGGCTATAC GACGAGATTCTAACATCTTACATGATACAAGCAAAGTGGTGGATTCAGGTTCTTGTGCCATTCTAGCCAAAGTTGATGAAATACTAGTGAGTTTTAAGGT CATTCAGTCTAACTGTGGGCACAATAAGGGAACTGAGAGACCAGAATTAACGTCAAAATACATAGCTCTCTTGACTATGGAGAAAGCTTGCTTATCTAAG ATCGCTCTTGAAGATACTTCAGGCATGGTAAGGAAGATGGATGGAAACTTTAAGGAGAAACTGCGAGAGCTTGGAGGACTTGATGCTGTCTTTGAAGTTG CTATGAGCTGCTACTCTGTTATCGAGAATTTGGAGAGTCAACATTCATCCTCATCTCAGAGTGCACAAGATGTCTTGGTCCTGCCGAGCCTCGTGATGCT TTTGAAATGTTTGAAGATCATGGAGAATGCTACATTCTTGAGCAAAGAGAACCAGGACCATTTACTTATGATGAAAAGAAACTCTGACTCTCATGGTTGC CGAATATCTTTTACCAAACTTATCATAAGTGTCATCAAGATTTTATCAGGTCTCTATCTTCGCCGAACCTCTGCATCTGCTGATGGAAAGTCTTGTAGCC TCTCCAATGGCGAGTACAAAGTAGACAGCAATGGAGTAATATGCATAAGTTCTTCAGAATCGGAGTGCTATATCACAGAAGTGATCGAATCTAAAAGAAG CTCTGGTAAATCAGCTGCACAACAGGCTCTTTCTGTTTCCAGAGAAGCTACCACTACAACCATGGAAGACAATAATCTGCTAAAGATGAGAGTTCGCTCC TCGCTATTCAGTTCAAGCAGTCAGACATCAAGGAGTTCTAATGGCACAGTTTCTGCAGCTAGTAAAGGGTCAAGGACGAATTATGATCTTGTTGATATAG ACAATAAACTTTCTGATAGTGAAGATCCCTTTGCATTTGATGGTGATGATGACTTAGGGCCGTCAAAGTGGGATGTCTTATCTGGTAAAAGAAGAAAAGT ATCTCGAACCTCGGCAGTGATCAAACCTGCAAAAGAATCTAGTAATACAGCAGGGTCTGAACATGAACAACTCAACGGAGGAGAATACCTTCAGTCTTCA GGAAATGACTCCAATTCGACCGTTCCAGATGAAGAATGCTCAACACTTCTATCTGAGTGCCTCCTTACTTCTGTGAAGGCAATTACACTCACTTGCTATT CATACTTTTCAAAGTTTCGTCCACAAATCATGGATTTCAAAGCTCTCTTTTGTGTGTTTCGGCAGGTTCTGATGAATTTAACGAATGAAAACCCAGTTGG CTGCCGCCAAGTTGCTGCTTGCAGAGGGCTGGAAACTATGTCTTCATTGATAGCTGATCACTTCCCTTCATTCAATTTACCTTCCTCTCCAGTAGACCCT TCAAGTTCTGCACTTGAGCATCCAGACGAAGGTCGTCTGACTGATCAAGATTTGGATTTTCTTGTCGCAATATTGGGCCTCCTTGTTAACCTGGTGGAGA AAGACGGCCAAAACAGGTCAAAGCTTGCGTCGGCTAGTGTCTCGTTAGCCAACTCACAAGGACGAGACAACGATAGTCACGGGGATGTGATTCCACTGCT CTGTTCGATCTTTAAAGCCCACCGTGGCAATGGTGATCAATCTGAACAAGGAAATGGCATAGAATGGGGTGATGAGGAAGCCATGATGGAAGGAGAGAAA GAAGCAGAGAAAATGATCGTAGAGGCTTATGCAGCTCTGCTTCTCGCGTTTCTTTCAACCGAAAGCAAGAGTACACGTGACTCCATCTCGGAGTGCCTCC CAGACCAGAACCTCAGTGTTCTCGTTCCTGTACTGGAGAGATTTGTGGCGTTTCATTTGTCGTTGAACATGATCTCGCCGGAGACTCACAAAGCGGTGAA AGAAGTGATCGAGTCGTGTAAGGTGCCATGA
AA sequence Show only first row Show all	>Lus10005857 pacid=23176927 polypeptide=Lus10005857 locus=Lus10005857.g ID=Lus10005857.BGIv1.0 annot-version=v1.0 MIVRTYGRRSSRSSFSDSLDDDGDGDNSLLGGGGGDSFSLSQETPSQSFYDFPFSSQESSSFWPSSSQDDLPPRPRKSKKPRNGKLEKQERRAWVPLTST TLMEAQEYGEMMEHVDEVNFALDGLRKGQHVRIRRASLLSLMTICGTGQKRRLLRAQGTVKTIMDAVLGLTFDDTPSNLAAATLFYVLSSDGQDDQMLES PSCIRFLLKLLKPVPSVATEEKTRSLGSKLMAIRRDSNILHDTSKVVDSGSCAILAKVDEILVSFKVIQSNCGHNKGTERPELTSKYIALLTMEKACLSK IALEDTSGMVRKMDGNFKEKLRELGGLDAVFEVAMSCYSVIENLESQHSSSSQSAQDVLVLPSLVMLLKCLKIMENATFLSKENQDHLLMMKRNSDSHGC RISFTKLIISVIKILSGLYLRRTSASADGKSCSLSNGEYKVDSNGVICISSSESECYITEVIESKRSSGKSAAQQALSVSREATTTTMEDNNLLKMRVRS SLFSSSSQTSRSSNGTVSAASKGSRTNYDLVDIDNKLSDSEDPFAFDGDDDLGPSKWDVLSGKRRKVSRTSAVIKPAKESSNTAGSEHEQLNGGEYLQSS GNDSNSTVPDEECSTLLSECLLTSVKAITLTCYSYFSKFRPQIMDFKALFCVFRQVLMNLTNENPVGCRQVAACRGLETMSSLIADHFPSFNLPSSPVDP SSSALEHPDEGRLTDQDLDFLVAILGLLVNLVEKDGQNRSKLASASVSLANSQGRDNDSHGDVIPLLCSIFKAHRGNGDQSEQGNGIEWGDEEAMMEGEK EAEKMIVEAYAALLLAFLSTESKSTRDSISECLPDQNLSVLVPVLERFVAFHLSLNMISPETHKAVKEVIESCKVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	0	1
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	2.4	0.8550
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	5.3	0.8516
AT1G23230			unknown protein		Lus10035997 [exp]	6.0	0.8582
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	6.9	0.8647
					Lus10018953 [exp]	7.8	0.7818
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	9.5	0.8266
AT5G23250			Succinyl-CoA ligase, alpha sub...		Lus10003877 [exp]	10.7	0.7597
AT1G23230			unknown protein		Lus10016701 [exp]	10.7	0.8513
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	12.7	0.8290
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	17.7	0.7866

Compare expression of checked genes

Lus10005857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.