Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 174 / 5e-52 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 159 / 3e-46 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 153 / 5e-44 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 150 / 3e-42 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 134 / 6e-37 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 131 / 1e-35 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 130 / 4e-35 ATSEH soluble epoxide hydrolase (.1) AT1G52510 43 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001210 [exp] 550 / 0 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 357 / 7e-124 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 355 / 6e-123 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 349 / 2e-120 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 348 / 5e-120 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 335 / 7e-115 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 316 / 2e-107 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 168 / 7e-50 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 168 / 1e-49 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048000 [exp] 387 / 9e-136 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 322 / 7e-110 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 315 / 2e-107 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 298 / 1e-100 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 186 / 1e-56 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 184 / 5e-56 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 171 / 6e-51 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 156 / 2e-45 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 155 / 1e-44 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 150 / 9e-43 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10005858 pacid=23176940 polypeptide=Lus10005858 locus=Lus10005858.g ID=Lus10005858.BGIv1.0 annot-version=v1.0 ATGGAGCAAATCACCCACAAGTTCGTCGACGTCGGACCAGGATTAAAGCTCCATGTCGCCGACGTCGGAACAGGGGACAGAGTAATCCTCCTGCTCCACG GATTCCCCGAGATATGGTACTCCTGGCGGCACCAGATGATCGCCCTATCCAACGCCGGTTACCGGGCCATCGCTCCGGAATACAGAGGTTACGGGTTGTC CGACCCGCCTCCGAAGCCTGAAGAAGCCACCTTTGCCGATTTCGCCGCCGATATGGCCGCCGTCCTCGATTCCCTCGGAATTCTGAAGGTTGTCGTGGTC GCCAAGGACTTTGGTGCTTATGTGGCGTCTCGATTCTCCGTCGTCTACTCCGAAAGGATGCTGGGACTCGTCACTATAGGGATACCGTACACCCCGCCGG GTCCCGGCGCCTCGGCCATCATGGCTCTGTTCCCCGAAGGGTTTTATGCTCGCCGGTGGATGGAGCATGGTAGAGCCGAAGCTGATTTCGGCCGATTTGA TGCGAAGACGGTGGTGAGGAAAATTTATATCCTCTTCGCCGGAGAGGAATTGCCAACGGCGGCTGAAAAGCAAGAAATTTTTGATTTGGTGGACCCATCG GATCCTCTTCCTAGTTGGTTCACGGAGGACGATCTTTCCACTTATGGAGCTCTATACCACAACTCTGGTTTCCATACTGCATTGAAGGTTCCTTACAGAT CAATGGATGAAGCGGCGGAAATAGCAGATCCGACGGTCAAAGTTCCGGCAATGCTGATTCTCGGCGATAAAGATTACGTGAACAAATCTCCAGGGTTCGA GGACTATGCCAACAATGGAGTGAAGCATTTCGTCCAGGACCTGAAGATCATACATTTGAGTGAAGGAAGCCATTTTGTACAGGAACAATTCCCTGAACAA GTGAATGAGCTTGTACTAGATTTCCTCGAAACCATAATTTGGTCTTGA
AA sequence Show only first row Show all	>Lus10005858 pacid=23176940 polypeptide=Lus10005858 locus=Lus10005858.g ID=Lus10005858.BGIv1.0 annot-version=v1.0 MEQITHKFVDVGPGLKLHVADVGTGDRVILLLHGFPEIWYSWRHQMIALSNAGYRAIAPEYRGYGLSDPPPKPEEATFADFAADMAAVLDSLGILKVVVV AKDFGAYVASRFSVVYSERMLGLVTIGIPYTPPGPGASAIMALFPEGFYARRWMEHGRAEADFGRFDAKTVVRKIYILFAGEELPTAAEKQEIFDLVDPS DPLPSWFTEDDLSTYGALYHNSGFHTALKVPYRSMDEAAEIADPTVKVPAMLILGDKDYVNKSPGFEDYANNGVKHFVQDLKIIHLSEGSHFVQEQFPEQ VNELVLDFLETIIWS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	1.4	0.9979
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	1.7	0.9942
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	2.4	0.9922
					Lus10032178 [exp]	3.5	0.9943
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	4.2	0.9914
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	5.3	0.9904
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	5.9	0.9935
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	6.3	0.9937
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	9.5	0.9918
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	9.5	0.9913

Compare expression of checked genes

Lus10005858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.