Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47160 372 / 3e-132 RING/U-box superfamily protein (.1.2) AT5G58787 348 / 1e-122 RING/U-box superfamily protein (.1.2) AT5G01520 336 / 4e-118 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT1G24440 215 / 3e-70 RING/U-box superfamily protein (.1) AT1G13195 206 / 3e-66 RING/U-box superfamily protein (.1.2) AT5G41350 43 / 7e-05 RING/U-box superfamily protein (.1) AT1G49220 43 / 7e-05 RING/U-box superfamily protein (.1) AT5G01960 43 / 0.0001 RING/U-box superfamily protein (.1) AT5G37230 42 / 0.0001 RING/U-box superfamily protein (.1) AT1G49210 42 / 0.0001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001209 [exp] 460 / 4e-167 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 352 / 5e-124 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 351 / 6e-124 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 226 / 1e-74 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 224 / 8e-74 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 221 / 2e-72 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 218 / 6e-71 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 213 / 4e-69 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006253 [exp] 212 / 6e-69 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045400 [exp] 390 / 4e-139 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 369 / 4e-131 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 365 / 3e-129 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 359 / 3e-127 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 349 / 4e-123 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 341 / 8e-120 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 230 / 4e-76 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 223 / 3e-73 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 219 / 6e-72 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.012G093300 [exp] 211 / 9e-69 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005859 pacid=23176934 polypeptide=Lus10005859 locus=Lus10005859.g ID=Lus10005859.BGIv1.0 annot-version=v1.0 ATGGTTAAGTCTTCGTTTAAAGATTCGCTCAAAGCTCTTGAAGCTGACATCCAACACGCCAACACTCTGGCTTTGGATTATCCGAGGGAGAACGATGGAG CACGTATGCAGATGAGATTATCTTACAGCCCAGCTGCCCAGTTTTTCATGTTCCTTGTTCAGTGGACTGATTGTCATCTAGCTGGAGCCTTTGGCTTGCT CCGGATTCTTATTTACATGACCTATGATGATGGAAAGACTACTATGTCTGTGTACGAAAGACGAGCCAGCCTCAAAGAATTCTATGGTGTGATATTTCCT TCCTTGTTGCAACTTCAGAGGGGGATAACAGAGTTGGAAGACAGGAAACAGATTGAAGTATGCAGCAGCAAATACACTAGAGAAGGGGAAATGTCTCGAA TCGATGCCGAACGAGAAGAGGAATGCGGGATTTGTATGGAGATGAACCAGAAATTCGTGCTGCCTGATTGCAATCACTCAATGTGTCTCAAGTGTTTCCG CGACTGGCGTGGGAGGTCGGAGTCGTGTCCGTTTTGTCGAGACAGCCTGAAGAGGACCAATTCCGGGGATCTTTGGATATACACAGAAAGTTCTGAAATA GTTGACTTGCCTTTTATTTCCAGGGAGAATTGCAAGAGGCTGTTCATGTACATTGATAAGCTGCCACTCATTGTTCCAGATCATCTTTATTCCACGTGA
AA sequence Show only first row Show all	>Lus10005859 pacid=23176934 polypeptide=Lus10005859 locus=Lus10005859.g ID=Lus10005859.BGIv1.0 annot-version=v1.0 MVKSSFKDSLKALEADIQHANTLALDYPRENDGARMQMRLSYSPAAQFFMFLVQWTDCHLAGAFGLLRILIYMTYDDGKTTMSVYERRASLKEFYGVIFP SLLQLQRGITELEDRKQIEVCSSKYTREGEMSRIDAEREEECGICMEMNQKFVLPDCNHSMCLKCFRDWRGRSESCPFCRDSLKRTNSGDLWIYTESSEI VDLPFISRENCKRLFMYIDKLPLIVPDHLYST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47160			RING/U-box superfamily protein...		Lus10005859 [exp]	0	1
					Lus10006006 [exp]	3.6	0.9247
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	7.2	0.9244
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	9.5	0.9144
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	12.1	0.9087
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	12.5	0.9166
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	14.1	0.9069
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	14.5	0.9092
AT5G66930			unknown protein		Lus10019643 [exp]	16.7	0.9212
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	20.0	0.9086
AT4G22000			unknown protein		Lus10001488 [exp]	23.7	0.8568

Compare expression of checked genes

Lus10005859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.