Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07230 810 / 0 NPC1 non-specific phospholipase C1 (.1) AT2G26870 656 / 0 NPC2 non-specific phospholipase C2 (.1) AT3G48610 591 / 0 NPC6 non-specific phospholipase C6 (.1) AT3G03520 574 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03530 560 / 0 NPC4 non-specific phospholipase C4 (.1) AT3G03540 543 / 0 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040678 [exp] 982 / 0 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10025726 [exp] 594 / 0 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10028492 [exp] 593 / 0 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10009153 [exp] 589 / 0 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10035935 [exp] 589 / 0 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10036038 [exp] 363 / 3e-123 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10001208 [exp] 245 / 1e-79 AT1G07230 213 / 1e-67 non-specific phospholipase C1 (.1) Lus10001207 [exp] 198 / 1e-61 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1) Lus10036039 [exp] 175 / 1e-51 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250500 [exp] 852 / 0 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 848 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.009G069900 [exp] 659 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G275500 [exp] 648 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 615 / 0 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.015G097900 [exp] 610 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.013G073600 [exp] 609 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10005860 pacid=23176951 polypeptide=Lus10005860 locus=Lus10005860.g ID=Lus10005860.BGIv1.0 annot-version=v1.0 ATGGATTCCCGGCGGAAGCTACCACTCACAGCAATCTTCCTGCTCTGTCTGGCCGTCTCTTGCCACTCCCGAGACTACCAAAAGCTCTTCAACCTCAACA AGCACAAAATCAACGGACCCATCAAAACAATCGTCGTTCTAGTCATGGAGAATCGCTCATTTGACCACATGCTCGGCTGGCTCAAGTCAACCCGCCCTGA CATCGATGGACTCACCGGAACCGAGTCCAACAAGATATCCGTCACCGATCCAGACTCCCCTGAAGTCTTCGTCTCCAACAAGGCCATTTTCGTTGACTCC GACCCGGGCCACTCATTCCAGGCTATCCGGGAACAGATCTTCGGGTCGAATAACACCCGCCGGAATCCAGCTCCGATGAACGGATTCGTCCAGCAAGCGT CCAACATGAGTGAGTCAATGGCCGAGACGGTGATGAGCGGGTTCCACCCCAGTCGGATCCCGGTTTTCACCAAGTTAGCCAATGAGTTCGCCGTCTTCGA CCGGTGGTTCGCTTCGGTTCCCGCGTCGACTCAACCGAACCGGTTCTACGTCCACTCAGCTACTTCTCACGGCGCCACCAGCAATGTCCGGAAGGACTTG ATCGCCGGGTTCCCTCAGAAAACAATCTTCGATTCTCTCGATGAGAGTGGGCTCAGCTTTGGGATTTATTACCAGAGTATCCCCGCCACTCTCTTCTTCA GCTCGCTGAGGAAGCTGAAGAACGTCTTTAAATTCCATAGCTACGAGCTCAGCTTCAAGTCCCACGCGATGAAAGGCAAGCTACCGAATTATGTCGTCAT CGAGCAGCGTTGGTACGACGTGCCGTTTGGGCTTGCCAACGATGACCATCCTTCCCACGATGTCTCGGAAGGGCAGAAGTTCGTCAAGGAAGTTTACGAG ATTTTGAGAGCAAGCCCGCAGTGGAAAGAGATGGCGTTATTGATCACCTATGACGAACATGGCGGATTCTACGACCATGTTCCGACCCCGGTCTCCGGAG TTCCCAGTCCGGATGGGATCGTCGGTCCTGACCCATTCTACTTCGAATTCGACCGATTGGGAGTCCGTGTCCCCACTTTCTTGATCTCTCCCTGGATTGA AAAGGGTACAGTGATCCATGAGCCTAATGGTCCAACACCGACTTCTCAGTTTGAGCATTCTTCAGTGCCTGCCACTGTAAAGAAGCTATTCAACTTGAAA TCAAACTTCTTGACAAAGAGGGATGCTTGGGCTGGCACCTTCGACACTTACTTCAAACTTCGCAAAACTCCCCGCAACGACTGCCCAGAGACGCTGCCCG AAGTGACGCAGTCATTGAGGCCAGTGGGAGCTAAACCAGACGCGAAACTTTCTGAGTTCCAAATGGAACTAGTACAGCTTGCATCCCAGCTCAATGGCGA CCATGTACTCAACACTTATCCAGACATCGGCAAGACCATGACGGTTGCCAAAGCAAAAAAGTACACCGAAGACGCAGTGAGGAGGTTCCTCGAAGCTGGG ATAGCTGCACTCAGAGCCGGAGCTAACGAATCCTCCATCGTCACAATGAGACCTTCTCTCACCAGCCGGATTCCGGCAGGAAACTATGTAGAAGCCTATT AA
AA sequence Show only first row Show all	>Lus10005860 pacid=23176951 polypeptide=Lus10005860 locus=Lus10005860.g ID=Lus10005860.BGIv1.0 annot-version=v1.0 MDSRRKLPLTAIFLLCLAVSCHSRDYQKLFNLNKHKINGPIKTIVVLVMENRSFDHMLGWLKSTRPDIDGLTGTESNKISVTDPDSPEVFVSNKAIFVDS DPGHSFQAIREQIFGSNNTRRNPAPMNGFVQQASNMSESMAETVMSGFHPSRIPVFTKLANEFAVFDRWFASVPASTQPNRFYVHSATSHGATSNVRKDL IAGFPQKTIFDSLDESGLSFGIYYQSIPATLFFSSLRKLKNVFKFHSYELSFKSHAMKGKLPNYVVIEQRWYDVPFGLANDDHPSHDVSEGQKFVKEVYE ILRASPQWKEMALLITYDEHGGFYDHVPTPVSGVPSPDGIVGPDPFYFEFDRLGVRVPTFLISPWIEKGTVIHEPNGPTPTSQFEHSSVPATVKKLFNLK SNFLTKRDAWAGTFDTYFKLRKTPRNDCPETLPEVTQSLRPVGAKPDAKLSEFQMELVQLASQLNGDHVLNTYPDIGKTMTVAKAKKYTEDAVRRFLEAG IAALRAGANESSIVTMRPSLTSRIPAGNYVEAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10005860 [exp]	0	1
AT1G62810			Copper amine oxidase family pr...		Lus10024568 [exp]	4.5	0.8390
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	6.3	0.8866
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	7.9	0.8879
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	8.5	0.8825
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	11.0	0.8308
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	12.2	0.8585
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	15.0	0.8431
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	15.2	0.8600
AT5G59050			unknown protein		Lus10001626 [exp]	15.9	0.8499
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	16.5	0.8704

Compare expression of checked genes

Lus10005860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.