Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29890 1049 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3) AT5G57320 825 / 0 VLN5 villin 5, villin, putative (.1) AT4G30160 812 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT2G41740 663 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 655 / 0 ATVLN3, VLN3 villin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015333 [exp] 790 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10035450 [exp] 634 / 0 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10031066 [exp] 601 / 0 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10025461 [exp] 466 / 5e-151 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10015334 [exp] 92 / 9e-22 AT4G30160 132 / 3e-37 villin 4 (.1.2) Lus10015332 [exp] 53 / 2e-08 AT4G30160 100 / 4e-26 villin 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045000 [exp] 1217 / 0 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3) Potri.006G165300 [exp] 842 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.018G089700 [exp] 839 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.016G056200 [exp] 678 / 0 AT2G41740 1248 / 0.0 villin 2 (.1) Potri.006G050200 [exp] 664 / 0 AT2G41740 1340 / 0.0 villin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF02209 [flax] [poplar] VHP Villin headpiece domain
Representative CDS sequence Show only first row Show all	>Lus10005861 pacid=23176936 polypeptide=Lus10005861 locus=Lus10005861.g ID=Lus10005861.BGIv1.0 annot-version=v1.0 ATGGCGCTTTATGCTAAGGGCATTGACTCCGTATTCCAGAGTGCAGGCACCAAACCTGGCATTGAAATCTGGTGTGTTGAGGAGCTACAGTTGGTTAGCT TGCCGAAATCATTGCTTGGGAAATTCTACTCCGGAAATGCGTATGTAGTTTTGAATACATTTGTGAACAAAAGTGGAATTTCTCTGCACGACATACATTA CTGGATCGGGAAGGATGCTACCGAGGATGAATCGACCTTAGCATCAGACAAGGCCCTTGAACTTGATCAAGCTCTAGGCTCATGTACTGTTCAATATAGG GAAGTTCAAGGCCAAGAAACAGAGAAGTTTTTGGCATACTTCAAGCCTTGTATGATCCCAATTGAAGGAGTATTCTCTTCACAGCCTGGGCGTTGTGGCG GTGAAGGGTATAAAGTAACATTGCTGTCGTGCAAGGGGGAACACGTTGTCTCTGTGAAAGAAGTGCCCTTCACTCGATCATCCTTAAATCACAACGATGT CTTCATACTTGACACTGCATCCAAGATATTTCTCTTCAGTGGTTGTAACTCCAGCATACAAGAAAGAGCTAAAGCATTGGAAGTTGTTCATTATGTTAAT GAAAATAAGCATGGGGGAAACTGTGAGGTGGCAACCATAGAGGATGGTAAACTCGTTGGTGATCCTGATGTTGGTGAGTTCTGGAGCTTATTTGGAGGTT ATGCTCCCATGCCGAAGGATTCAGCTTCTGAAGTTCAACAGCAGTGCGATACTACCTCTCCCCAACTGTTCTGGATAACAACACAGGGAAAATTACGTCC AATTGAGAGCAATTCCTTGAACAAACAGTTGCTGGAGTCAAACAAATGTTACATGGTAGATTGTGGTGCTGAGATTTTTGTGTGGATGGGGAAAACTACC TTAATGACAGAACGGAAGACTTCAATTTCAGCTATCGAAGAATTTGTAAGAAATCAGGGAAGATCAACCACAACACATTTGAGTTTCTTAACTGAAGGAT CAGAATCTTCCATCTTTAGATCATATTTTGCAGATTGGCCTCAAGTAGTAGAGCCAAAGTTGTATGAAGAAGGCCGGGAAAAAGTAGCAGCTATGTTTAA GCAAAATGGTTACGAGGTGAAGGAACTTCCTGTTGAAGAAGACCACATACCGCATATAAGCTGCCAGGGAAAACTGAAAGTTTGGCGGGTAAATGGTAAG GAGTTGATACTGCTTACAGCTCCAGAACAGAAGAGGCTTTTCAATGGGGATTGCTATATTATTCAGTATACCTATGAGAACAATCAAAAGGATGAAAATA TACTGTATGTATGGTTTGGACGTGAGAGTCAACCAGAAGATAGAGTTGATGCGGTGTCTTCTGCGGAGGCTATTGTAGACTCGGCCAAGGGTGCTCCTGT GGTGGCTCAAATCATCCAGGATAAGGAGCCAGATTTGTTCTTCTTGATTTTCCAGACAGTTGTTGTTTTCAAGGGGGGTGTGAGTAAAAGATATAAGAGC TTCTTGGCAGACCTGGGTGTTTCTGATGAGACATATGATGGAAGCAAGACATCTCTATTTCGAGTTCAGGGGTCAAGTACACGGAACATGCAAGCTGTCC AGGTTGATCTTGTGTCAGCATCGCTTAATTCATCATATTGCTACATTCTACAAGCTGGAACATCTATCTTCACCTGGATTGGAAATCTGGCTTCTTCCAC AGACCATGACCTTGTCGACAAAATGCTTGAACTAATCAATGTATGCAAGCCAACATGGCAGCCTATATCAGTGCGAGAAGGCAGCGAACCCGATGATTTC TGGAATGCATTAGGTGGAAAAGCTGACTATCCCAAGGGAAAAACCATAAGCAGACACACAGAAGATCCGCATTTGTTTAAAGTGAAAGAAGTGTACAACT TCACACAGGATGATTTAACTACAGAAGATGTATTTGTCCTCAACTGCCACGAAGAAATATTCGTCTGGATTGGGCGCCATTCAAATGTTAAATCCAAACA ACAAGGGCTTAATTTTGGCTTGAATTTCCTCCAGAGCGATCCTCTTGTTGAAGGGTTGTCCTCGGAGACTCCTATCTATGTTGTTGCAGAAGGGCATGAG CCTCCACTGTTCACTCGTTTCTTTGAGTGGGATGCAGCAAAGGCTAATATGCATGGCAACTCCTTCGAACGGAAACTAGCTCTTCTGAAAGGGAAAAGGC AGAATCTGGAAGCGCCTCCTAGAAACTCGCTGGTTTCATCATCGAGGGAAGCTACACCGGATCGGAGGAAGTCTGTCAGTTCAAACGGGAAAGGAAATGG GCTGCCGACTGGAGCATATAATGGTTCAGGCTCACGTATTAGCTCTCCCAACAACCTTAAGTTCTCCAGCTCCCCTCCTGTCACTCGGAACCTCTTTCCC GAGTCTCCTAACGGTTCTGCCATTGCAGCGGGAAGCTCTCCCTCCACGAGGAAAGTAGTTGATCATCCGCAAGCTAACGGCAGCAACGTCAATCCAACCT CACCAATCTACCCATACGAGAGGCTGAAAGTTGACTCAAGTGATCTTGCGCCAGGCATTGATGTCGCCAGAAGAGAGACATACCTATCAGAGGAAGAGTT CCTGGAGAAGCTAGGAATGGGAAGGAAATCGTTCTACGGACTCGCGAAATGGAAGCAGAACAAGCTCAAGATGTCAGTTCAGCTCTTTTAA
AA sequence Show only first row Show all	>Lus10005861 pacid=23176936 polypeptide=Lus10005861 locus=Lus10005861.g ID=Lus10005861.BGIv1.0 annot-version=v1.0 MALYAKGIDSVFQSAGTKPGIEIWCVEELQLVSLPKSLLGKFYSGNAYVVLNTFVNKSGISLHDIHYWIGKDATEDESTLASDKALELDQALGSCTVQYR EVQGQETEKFLAYFKPCMIPIEGVFSSQPGRCGGEGYKVTLLSCKGEHVVSVKEVPFTRSSLNHNDVFILDTASKIFLFSGCNSSIQERAKALEVVHYVN ENKHGGNCEVATIEDGKLVGDPDVGEFWSLFGGYAPMPKDSASEVQQQCDTTSPQLFWITTQGKLRPIESNSLNKQLLESNKCYMVDCGAEIFVWMGKTT LMTERKTSISAIEEFVRNQGRSTTTHLSFLTEGSESSIFRSYFADWPQVVEPKLYEEGREKVAAMFKQNGYEVKELPVEEDHIPHISCQGKLKVWRVNGK ELILLTAPEQKRLFNGDCYIIQYTYENNQKDENILYVWFGRESQPEDRVDAVSSAEAIVDSAKGAPVVAQIIQDKEPDLFFLIFQTVVVFKGGVSKRYKS FLADLGVSDETYDGSKTSLFRVQGSSTRNMQAVQVDLVSASLNSSYCYILQAGTSIFTWIGNLASSTDHDLVDKMLELINVCKPTWQPISVREGSEPDDF WNALGGKADYPKGKTISRHTEDPHLFKVKEVYNFTQDDLTTEDVFVLNCHEEIFVWIGRHSNVKSKQQGLNFGLNFLQSDPLVEGLSSETPIYVVAEGHE PPLFTRFFEWDAAKANMHGNSFERKLALLKGKRQNLEAPPRNSLVSSSREATPDRRKSVSSNGKGNGLPTGAYNGSGSRISSPNNLKFSSSPPVTRNLFP ESPNGSAIAAGSSPSTRKVVDHPQANGSNVNPTSPIYPYERLKVDSSDLAPGIDVARRETYLSEEEFLEKLGMGRKSFYGLAKWKQNKLKMSVQLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	0	1
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	4.2	0.9474
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10029129 [exp]	6.0	0.9317
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	6.6	0.9513
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10014464 [exp]	8.4	0.9187
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10006156 [exp]	8.9	0.9265
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022544 [exp]	9.5	0.8899
AT3G08490			unknown protein		Lus10029519 [exp]	11.5	0.9312
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	13.0	0.9435
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	14.7	0.9421
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	16.3	0.9266

Compare expression of checked genes

Lus10005861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.