Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58800 290 / 4e-101 Quinone reductase family protein (.1.2) AT5G54500 273 / 2e-94 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT4G27270 271 / 9e-94 Quinone reductase family protein (.1) AT4G36750 247 / 4e-83 Quinone reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018401 [exp] 249 / 5e-85 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10006748 [exp] 249 / 6e-85 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10007612 [exp] 249 / 2e-84 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10020076 [exp] 246 / 6e-84 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10041718 [exp] 248 / 2e-83 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10026035 [exp] 245 / 1e-82 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10014325 [exp] 245 / 2e-82 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10040486 [exp] 223 / 3e-74 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10024032 [exp] 184 / 5e-60 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044400 [exp] 308 / 1e-108 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2) Potri.001G410700 [exp] 273 / 2e-94 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.011G129400 [exp] 266 / 1e-91 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.011G033100 [exp] 259 / 4e-89 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.004G028900 [exp] 254 / 4e-87 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.004G151100 [exp] 245 / 1e-82 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1) Potri.005G126200 [exp] 236 / 4e-79 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.007G029600 [exp] 234 / 2e-78 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10005862 pacid=23176920 polypeptide=Lus10005862 locus=Lus10005862.g ID=Lus10005862.BGIv1.0 annot-version=v1.0 ATGGCTCGGCAAATCCAGCGAGGAGCCAACTCCGTCCATGGCGTTGAAGCGACTCTCTGGCAGATACCGGAGACGCTCAACACAACCATACTGCAGAAGA TGAAGGCACCCCCAAAACCAGACGACATCCCATTTATCCGAACCGACCAGCTGGTCGAAGCCGATGGGTTCCTTTTCGGTTTCCCATCACGGTTCGGAGT CATGGCTGCTCAATGCAAGGCCTTTTTTGACGCGACAGAGGACCTCTGGAATGCCCAATCGCTCGCCGGGAAACCCGCCGGGATCTTCTGGAGCACCGGC TTCCACGGCGGAGGCCAGGAACTCACTGCATGGACGGCGATCACGCAGTTAGCTCACCACGGGATGCTGTTTGTACCAGTTGGGTACACGTTCGGAGAGG GGATGTTTGAGATGGATGAGGTGAAAGGTGGGTCTTCTTACGGTGCCGGAACTTTCGCTGCCGATGGGAGCCGGCAGCCAACGGAGCTTGAACTGCGGCA GGCTTTTCACCATGGGAAGTATGTTGCTCAGATTACCAAAAAGCTCAAGAGCTAA
AA sequence Show only first row Show all	>Lus10005862 pacid=23176920 polypeptide=Lus10005862 locus=Lus10005862.g ID=Lus10005862.BGIv1.0 annot-version=v1.0 MARQIQRGANSVHGVEATLWQIPETLNTTILQKMKAPPKPDDIPFIRTDQLVEADGFLFGFPSRFGVMAAQCKAFFDATEDLWNAQSLAGKPAGIFWSTG FHGGGQELTAWTAITQLAHHGMLFVPVGYTFGEGMFEMDEVKGGSSYGAGTFAADGSRQPTELELRQAFHHGKYVAQITKKLKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58800			Quinone reductase family prote...		Lus10005862 [exp]	0	1
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	4.5	0.9539
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	7.7	0.9471
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	8.8	0.9506
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	9.5	0.9418
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	10.4	0.9520
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	11.0	0.9379
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	12.0	0.9469
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	12.5	0.9489
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	12.7	0.9460
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10022616 [exp]	14.4	0.9459

Compare expression of checked genes

Lus10005862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.