Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07310 192 / 8e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 88 / 2e-20 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 60 / 8e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 52 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 49 / 2e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 47 / 1e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 44 / 7e-05 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT3G16510 42 / 0.0003 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040692 [exp] 302 / 3e-102 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10018213 [exp] 115 / 1e-30 AT1G07310 94 / 1e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 110 / 3e-28 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039259 [exp] 109 / 1e-27 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 56 / 2e-08 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10029565 [exp] 52 / 4e-08 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 52 / 4e-08 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10032780 [exp] 54 / 8e-08 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 49 / 2e-06 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043300 [exp] 286 / 3e-96 AT1G07310 205 / 9e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G249300 [exp] 273 / 6e-91 AT1G07310 224 / 1e-71 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 172 / 2e-51 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G144600 [exp] 112 / 6e-29 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 57 / 6e-09 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 56 / 1e-08 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 52 / 3e-07 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 51 / 5e-07 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 51 / 7e-07 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 49 / 2e-06 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10005867 pacid=23176910 polypeptide=Lus10005867 locus=Lus10005867.g ID=Lus10005867.BGIv1.0 annot-version=v1.0 ATGTCGCCCTACAAATCTCTCAATCTTGAGATCGCCATAGTTTCAGCTAAGCATCTCAAGAACGTCAACTGGAAAAACGGCGATCTGAAACCATATGCGA CCATCTACCTTGACAACTCCGACCACAGACTCGCCACACACGCCGACGACTCGGGATCCACTCGGCCCGTCTGGAACGAGCGATTCACGCTCCCAATCAC CCGTCCGATCACCGATTCCATCCTCACTTTGGAGATCTTGCACTCCAGGCCATCAGAGACCCCCAAACCTTTCGTGGGCGCCGTCAAGATCCCTCTGTCC CAGATTCTCGACTCCGACGAGTCTCCATCCAAAATCCGAAGCCTAGAGCTCCTCCGTCCTTCGGGTCGTCCTCACGGTAAGGTCCGCGTGAAGCTCGCCT TGAAAGAACGACCCTTGCTGCCTCCTCCTCCGATGGCTGCTCCTCCTCCTACTCCTCCGCAAATTCACGATTACCATAATGCGCCTAATTACTCCCACTA TTACGCTGTCGCAGCCCCTCCGCCTCCTGCCACGCCGAGGGATTACAGGGAGTTGTCCTCTCAGCCGTACAATTATCCTGATCAGTATGGTTACTACTCT GGCTATTACCCTCCGCAGCCACCTCTGCCGTCTCGGCCTTTGTACAATCGGGCGACAAGCTACAGCCTTCATCAGAGTGGGCCTTCTGCTCCGGTTGACA GTTCCATGCCTCCTTACGATCACAAGGCAGAGCCACCGTCGGCATCATTGCCAAAGACATCTTCTGATTATGGCGGACCGTCTGCTCCAGTGGACTACTC ATCACCATATGGGAACGTGAAGGGTAGCACTGCGGAGCTCAGCAGTTCTATGGGAGGGTTGAACCTCGAACAAACAGGGAGCAACTACGAGAAGGAGAAA GCTCCGGAGAGGGAGAGTTTCGGTTATAAAGACTACCGTCATCATGAGTATTGA
AA sequence Show only first row Show all	>Lus10005867 pacid=23176910 polypeptide=Lus10005867 locus=Lus10005867.g ID=Lus10005867.BGIv1.0 annot-version=v1.0 MSPYKSLNLEIAIVSAKHLKNVNWKNGDLKPYATIYLDNSDHRLATHADDSGSTRPVWNERFTLPITRPITDSILTLEILHSRPSETPKPFVGAVKIPLS QILDSDESPSKIRSLELLRPSGRPHGKVRVKLALKERPLLPPPPMAAPPPTPPQIHDYHNAPNYSHYYAVAAPPPPATPRDYRELSSQPYNYPDQYGYYS GYYPPQPPLPSRPLYNRATSYSLHQSGPSAPVDSSMPPYDHKAEPPSASLPKTSSDYGGPSAPVDYSSPYGNVKGSTAELSSSMGGLNLEQTGSNYEKEK APERESFGYKDYRHHEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	0	1
AT3G15610			Transducin/WD40 repeat-like su...		Lus10019450 [exp]	2.4	0.8706
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	2.8	0.8583
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	3.2	0.8612
AT4G17080			Histone H3 K4-specific methylt...		Lus10042858 [exp]	4.0	0.8508
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	4.2	0.8597
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	4.5	0.8636
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	6.2	0.8642
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	7.5	0.8444
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	8.2	0.8746
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	9.0	0.8576

Compare expression of checked genes

Lus10005867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.