Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 126 / 6e-29 unknown protein AT2G29620 122 / 3e-28 unknown protein AT1G07330 120 / 1e-27 unknown protein AT5G58880 95 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001202 [exp] 2031 / 0 AT2G29620 144 / 6e-35 unknown protein Lus10020367 [exp] 88 / 1e-17 AT5G17910 250 / 2e-73 unknown protein Lus10009543 [exp] 87 / 3e-17 AT2G29620 249 / 1e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249000 [exp] 164 / 1e-40 AT5G17910 134 / 2e-31 unknown protein Potri.009G043000 [exp] 157 / 1e-38 AT2G29620 169 / 6e-43 unknown protein Potri.013G068800 [exp] 137 / 2e-32 AT5G17910 437 / 3e-129 unknown protein Potri.019G044500 [exp] 132 / 5e-31 AT5G17910 296 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005869 pacid=23176926 polypeptide=Lus10005869 locus=Lus10005869.g ID=Lus10005869.BGIv1.0 annot-version=v1.0 ATGAGTTTGTATCTAAAGAGCATCGTCCTCAAGATTTGTAAATTCTCCTTTATAAATGTGTGTAAATATGTAAAGCACTACCCAATTGTGTCAGCAATTT CATCCCTACTTGTTCTCCTATACATCTTCATCCCTTCAGTTGTCATCTTCTTCATCTATCTTTCACCGATATTCATCCTTGTCGCCGCCACACTTTTTTA CCATTCCCGCTCAAAAGCTCAGGACGCCAAAAGAAATGGAATCAAACAAGAGAAGAAGATTGACAAGAAGCTATCCACGTTGGGGAAGTCCAAGTCTGTG GCCAATGATCGGCCAACAGTCACTAAACCGACCCGATCAATGTCTCAGAGGCGGAACAAGGAAAAGTTCTTCGTTGAGGCTGACCCGATAATTGCGCATG ATGTCAAAGCTAGCATCAGCGATTTCCTTAGAGAGGTGAGGAATAAAAGGGATGAAGAATCAGGGACAATGAAAGGAAAACATGATCAAGAAGGTGGAGG ATCGTGCTTCCTCGCCGAGAATAGGGATTCAAATCCCAAACTTGAAATTGACCCGCCGCTGGTTAACGATCAAAGAGGAGAGAACGATGAAGGAGGAGAG GATTTCGGGAGCTCAGAAGATGATAAGGCGGTGGTGGAGTGGAACGAAGACGATCAGAAGAATTTGATGGATTTAGGGATTTCAGAGACGGAGCGGAATA AGCGGCTGGAGAGCTTGATCGCAAGGAGAAGGTCGAGGAAGTTTTATAAGATGAGCAGTGAGAAAGGGATGATTGTGGATATTGATCTCGTTGGACCTTG TTCATCTCCTTCTGTTGCTGCTTCCGAGATTGTTTCTCCTGTATTGATCTCAACTAGTAGAATTGATGACCATTTGTTACTCCACGGTTCTTCAGGGGAC GATCAATTTCCTGGCTCTGCACCATCGATTCTGCTGCCAGGAAAAAACCCATTTGATCTCCCTTATGATCCACACGAAGAGAAGCCTGATCTCATGGCAG ACAGCTTCCAAGAAGAGTTCTCCATTACTCCCCATAAGGAAATGTGTAGGCATGAAAGCTTCTCCCTCGGGCATACAACCAGAGCTAAAATTCTTTCGGG CACCATTAATGAACAAAAACCACCACGACTGTCCGATCCAATTGCTCGCACAGTTAGCATAACTGATCTGGTGGTTACTGATCCTCTTGAACCAAGACAG CCAGATGATTCTGCTCCAAGTGAAATAATAGAATTCACAAGTGACCATAGTGTGAGAAGGGATGAGAAGAATATTCCCAAAGATGCTAACGATCAAGGAT CTGAAATCTCACCAAATCCACGACCGCCTTCTCTCCCACGACCAATTCCTAAGGCTGCAAGTGCAAGCGATTTGTCCAACGATGCTAGCTTATCGATAAT TCACAACATGAGAGTCGACGAGCATTACCAGAATAGAGGGACGTGGCATACACCGACCAACTCAGTTGCATCGGATTTGCAAGTGGGGGTGTCAGAAGTC GGATCTCCTATGTCTACTGTTTCAGATGTTGATGATGATCATGACGGAGGGTCACTGACTTATGATGGGGACATTGAGAAAGAAGTTAATTCTGGGAATG AGGAATTATGGGGGTTATCTCCACATGCACCAAGGATTGGGAAACACGAGTTGGCTCTAAGGTTTCTAAACGAGGCTAGTGAGGAAGGTATGAGAGAGAC AAGATTTGCAGTCAATTTACAAGGTTTTGATGCAGAGATCATAGATGATATTAAACCACTAGAAAAGGAAGAAGAAGTAGCAGAATTCATAACTAAAGAT AGCAAAGATCACTATATAGCTGATCGACAAGAATCAAAGGAAATATTAGACCCTCTACAAGTTGATGTTGAAGAGGAGATGAAGAAGAATAATGACATGA TGGACGGAGATATTGAAAAGATCAATAATACAGAAGAATTGAAATCAATTGAAAGACAAACCATCTATGAAATTGGGGATGATCGATCCAAAACAGTCGA GGCAATTGTTACTGAACCCTGTAGTCATTTTGAGAGGGAATTGTTGCAGTGTCCAGAGAAGTTAGCTAATCTTATAGTTAAGAGAAGCGAGCAAATAGAT AGTGCTTCAAGCTCAACAAGCGACTCAGTCGGTAGAGTACTTGAACCATTGCACCATAATGATGTTGGCATAAGGGATGATAAGGTTGTTCCAACTCCGG CAAATGAAGCTTCAAGGTTCGCTGAAGATGTTGAAGATTCAAGAGGAGGCAATATGAGGGATGGGAATGTTCAAAAAATCTTGACACCAAGTGAAACTCA ATCGAAAAATTCAGTCGTGGATGACAGAGTTATAGTGACAAGTCCAAGCTATGTGTCCCAAACCTTGTCATCTTTACAACCAGAAGTCGCAATTGACCAA GATCTCACCGACTTGAACTCCACACTATCTCATGTATCTGTTCTAATGGACGTGAACCAACAAGAAGCACAATCATCCCCGTCACCTAGCAACCAACAGG TGCACGACATGGAAGAGTCAGCATATCATGTAGATCAAACTCCAATGAACCATAATGAACAACATCAACCATTAGAAAGTTCCAATGGTGAGATCAATTC ACGTGAGAGTTTGTCAAGGGTCGATGATCAAGATCGTAACGAAATGGAGTTTACTCCTCAACATTGGAATGGTGAAAATCATAATGCTCAGGGGAAAGAG GAAAATTTAACTGAGACCCTACAGAATAGTGATCCAGTAGTGAAGCGTGAAACCCACGTCAAAGAAAAAGTGCCCAAATCATTTGAGGACGTTACTTGTA GTCCTAATCCCTATGGACACTTTGAAGGTGCCACTTCCAGTGCCTCCAAGAGTGAAGACAGCCAATACCACGTTAATCTTGAAGAGAAGGAAAACAAAAG ACTTACACAAGGGGAAACAGGAGAAAGCAATAACAATGAAAATGTGGTCGATGAAGGAAAAGAAGTGAAATCATTGTCAATCACAAAAGAAGCTATTGCA GAACCAGAAATTTTACATAACATGTCGGTTCGGTCAGATGACCTTAAAATGGAATCATTATCAACAGTGAAACAAGAACTCATTATGGAGCTACCAAACC CAGGTAATTTGGTTCCTTCCAATAACCTTCAGGGGGATGTCATTGAGTCAATCAGACAAGATGCCACAGCTGAAATAGTGAAACCAAGTGACTTAATCTC TCAACAAACCCTTGAAGGGGAATCGTTGTCCTCGGTCAGACGAGAAGCTATGGCAGAGTCACTAAAAGAAGTTGATATGATTTCCACAAAGTCTCTTCTT GATGGCAATGAATCCATGTCATCAATTAAAGAAGCAATAACCACTATGGAACAATCAAAGGCAGTAGTCGACTCGATTCCTCTCATGGCAGCTGAAGATG ATTCTTTAGCATCAGTCCAACTAAAAGCCTCAATGGAGCCGTTGAAAACAGATGACTTGATGCCTTCATTATCCCGCAGAGACGAATCTTTATCATCAAT CAAACAAGTTGCCGCTATGGAAGAACATGCACCAGCTGATTCGATGTCCTCTATCGAGAGCGTTCAAGCTGCACCGATCCAGACTGAAGTAGTTCATATT GAAACTTCTAAACCAATTGTTGAAGATGAAACCCCAAGTTTAAGCAATAACATTTCTCCAGTAAAGGTATAA
AA sequence Show only first row Show all	>Lus10005869 pacid=23176926 polypeptide=Lus10005869 locus=Lus10005869.g ID=Lus10005869.BGIv1.0 annot-version=v1.0 MSLYLKSIVLKICKFSFINVCKYVKHYPIVSAISSLLVLLYIFIPSVVIFFIYLSPIFILVAATLFYHSRSKAQDAKRNGIKQEKKIDKKLSTLGKSKSV ANDRPTVTKPTRSMSQRRNKEKFFVEADPIIAHDVKASISDFLREVRNKRDEESGTMKGKHDQEGGGSCFLAENRDSNPKLEIDPPLVNDQRGENDEGGE DFGSSEDDKAVVEWNEDDQKNLMDLGISETERNKRLESLIARRRSRKFYKMSSEKGMIVDIDLVGPCSSPSVAASEIVSPVLISTSRIDDHLLLHGSSGD DQFPGSAPSILLPGKNPFDLPYDPHEEKPDLMADSFQEEFSITPHKEMCRHESFSLGHTTRAKILSGTINEQKPPRLSDPIARTVSITDLVVTDPLEPRQ PDDSAPSEIIEFTSDHSVRRDEKNIPKDANDQGSEISPNPRPPSLPRPIPKAASASDLSNDASLSIIHNMRVDEHYQNRGTWHTPTNSVASDLQVGVSEV GSPMSTVSDVDDDHDGGSLTYDGDIEKEVNSGNEELWGLSPHAPRIGKHELALRFLNEASEEGMRETRFAVNLQGFDAEIIDDIKPLEKEEEVAEFITKD SKDHYIADRQESKEILDPLQVDVEEEMKKNNDMMDGDIEKINNTEELKSIERQTIYEIGDDRSKTVEAIVTEPCSHFERELLQCPEKLANLIVKRSEQID SASSSTSDSVGRVLEPLHHNDVGIRDDKVVPTPANEASRFAEDVEDSRGGNMRDGNVQKILTPSETQSKNSVVDDRVIVTSPSYVSQTLSSLQPEVAIDQ DLTDLNSTLSHVSVLMDVNQQEAQSSPSPSNQQVHDMEESAYHVDQTPMNHNEQHQPLESSNGEINSRESLSRVDDQDRNEMEFTPQHWNGENHNAQGKE ENLTETLQNSDPVVKRETHVKEKVPKSFEDVTCSPNPYGHFEGATSSASKSEDSQYHVNLEEKENKRLTQGETGESNNNENVVDEGKEVKSLSITKEAIA EPEILHNMSVRSDDLKMESLSTVKQELIMELPNPGNLVPSNNLQGDVIESIRQDATAEIVKPSDLISQQTLEGESLSSVRREAMAESLKEVDMISTKSLL DGNESMSSIKEAITTMEQSKAVVDSIPLMAAEDDSLASVQLKASMEPLKTDDLMPSLSRRDESLSSIKQVAAMEEHAPADSMSSIESVQAAPIQTEVVHI ETSKPIVEDETPSLSNNISPVKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58880			unknown protein		Lus10005869 [exp]	0	1
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	7.6	0.8981
					Lus10043397 [exp]	11.9	0.9100
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	14.6	0.8240
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	16.6	0.8630
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	17.0	0.8726
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	19.8	0.8981
					Lus10004843 [exp]	21.0	0.8308
					Lus10003493 [exp]	27.0	0.8601
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	29.2	0.8410
AT2G14095			unknown protein		Lus10025500 [exp]	29.3	0.8909

Compare expression of checked genes

Lus10005869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.