Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26250 601 / 0 Major facilitator superfamily protein (.1) AT3G05960 597 / 0 ATSTP6 sugar transporter 6 (.1) AT1G07340 588 / 0 ATSTP2 sugar transporter 2 (.1) AT5G26340 564 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 529 / 0 Major facilitator superfamily protein (.1) AT3G19930 518 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT1G50310 514 / 1e-179 ATSTP9 sugar transporter 9 (.1) AT1G11260 505 / 6e-176 ATSTP1, STP1 sugar transporter 1 (.1) AT4G02050 503 / 2e-175 STP7 sugar transporter protein 7 (.1) AT4G21480 500 / 3e-174 STP12 sugar transporter protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002452 [exp] 576 / 0 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10002450 [exp] 555 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 555 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021926 [exp] 552 / 0 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 545 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010532 [exp] 518 / 0 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1) Lus10013441 [exp] 517 / 1e-180 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 501 / 2e-174 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 488 / 2e-169 AT1G11260 798 / 0.0 sugar transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042900 [exp] 731 / 0 AT5G26250 577 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 706 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.010G090000 [exp] 604 / 0 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150800 [exp] 595 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150700 [exp] 595 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 557 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 540 / 0 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 524 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 521 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 516 / 3e-180 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10005870 pacid=23176923 polypeptide=Lus10005870 locus=Lus10005870.g ID=Lus10005870.BGIv1.0 annot-version=v1.0 ATGGCAGGTCTAACGATTTCGGAAAGCGGTCTGTCGGACTTCCCGGCCAAGCTCACGTTTCAGGTGGTTATTTGTACAATCATTGCTGCATTTGGAGGGT TCATGTTTGGCTACGACATTGGCATTTCAGGTGGAGTTACGGCAATGGACAGCTTCCTGAAACCATTCTTCCCTCATGTTTACATCAAGAAGCACACGGC TAAATCCAACAACTACTGTAAATACAATGACCATTACCTCCAGCTTTTCACTTCTTCACTCTATTTAGCAGCAATCGTGGCTAGCTTCTTTGCATCACTT GTTTGTAAAAGACTGGGAAGAAAACCCACTATGCAAATCGCTTCTGTCTTCTTCTTTATCGGAGCTGCTGTCAATGCTGCTTCTCAGAACCTCGGTATGT TGATTGTTGGAAGGCTTTTCTTAGGCGCTGGAGTTGGGTTTGGTAATCAGACTGTGCCATTGTTCATATCAGAAATTGCGCCAGCAAATTACAGGGGAGG ACTCAACATCGCGTTTCAGTTCCTGATCACACTAGGAATACTGAGTGCAAACGTTGTAAATTTCTTCACTTCAAAAATGAAGACTCATGGGTGGAGGATT TCCTTAGGCGGAGCTACACTTCCTGCTGTCGTTCTTCTCTTGGGGTCGTTCATAATTGTGGAGACTCCGACGAGTCTTTTGGAGCGGGGGAAGACAGAGA AGGCTCGATCGACTCTACAGAGAATCAGAGGAGTCGATAACGTCGATAAGGAATTCTCAGAGATTCGTGACGCTGTAGAAATGGCTAAACAGTGTAAACA CCCGTTTAGGAACCTCAAGAAAAGACAGTATAGGCCTCAGCTAATCTGTGGCACAATTATACAGGTGTTCCAGCAGCTTACTGGTATCAGTGTGATAACA TTCTACTCCCCAGCTCTGTTTCAGACCATGGGTTTAGGAGAGAATGCGTCTCTTTTCTCAGCTGTGATGATCAATACCATCAAACCGATTTGCACAGTGG TTGCGATTTTGGTTGTGGATAGGTTTGGGAGAAGGGTTTTGCTTATTGAAGCTTCCACTCAGATGTTCATCGCTGAGTGTGCAATTGGGGTGATTCTGGC GGTACACCTGCATACAACGACTGTGATGCCAAGGTATTATGCAGTGGCGGTGATATGCTTGATAGGTGTGTTCTTGTCCGGATTTGCTTGGTCATGGGGT CCATTGGGATGGTTGATTCCAAGTGAAATATACCCGTTGGAGACTAGAACTGCTGGTTTCTTCTTCTCGGTGAGCATGAACATGCTGTGGACATTCATAA TAGCTCAGACTTTCCTGACGATGTTGTGCTATATGCGAGCGGGGACCTTCTTCTTCTTTACGGTGTGTCTGTTTGTGATGGGGACTTTTGCACTAGTGTT TCTACCAGAGACGAAAGGAGTCCCTATTGATGAGATGGTGGAGAAGGTTTGGAAGAAACACTGGTTCTGGAAGAGGTACTACACTGATTATGACGATAAC GTTGGTAACAAGAGAATGGGTGGCAAATGA
AA sequence Show only first row Show all	>Lus10005870 pacid=23176923 polypeptide=Lus10005870 locus=Lus10005870.g ID=Lus10005870.BGIv1.0 annot-version=v1.0 MAGLTISESGLSDFPAKLTFQVVICTIIAAFGGFMFGYDIGISGGVTAMDSFLKPFFPHVYIKKHTAKSNNYCKYNDHYLQLFTSSLYLAAIVASFFASL VCKRLGRKPTMQIASVFFFIGAAVNAASQNLGMLIVGRLFLGAGVGFGNQTVPLFISEIAPANYRGGLNIAFQFLITLGILSANVVNFFTSKMKTHGWRI SLGGATLPAVVLLLGSFIIVETPTSLLERGKTEKARSTLQRIRGVDNVDKEFSEIRDAVEMAKQCKHPFRNLKKRQYRPQLICGTIIQVFQQLTGISVIT FYSPALFQTMGLGENASLFSAVMINTIKPICTVVAILVVDRFGRRVLLIEASTQMFIAECAIGVILAVHLHTTTVMPRYYAVAVICLIGVFLSGFAWSWG PLGWLIPSEIYPLETRTAGFFFSVSMNMLWTFIIAQTFLTMLCYMRAGTFFFFTVCLFVMGTFALVFLPETKGVPIDEMVEKVWKKHWFWKRYYTDYDDN VGNKRMGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26250			Major facilitator superfamily ...		Lus10005870 [exp]	0	1
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	7.9	0.8130
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10031048 [exp]	11.8	0.8053
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10001201 [exp]	15.3	0.7936
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	31.0	0.7774
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10018442 [exp]	40.4	0.7677
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Lus10041567 [exp]	40.6	0.7245
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	49.7	0.7381
AT1G25275			unknown protein		Lus10006792 [exp]	60.2	0.7549
AT4G33380			unknown protein		Lus10006482 [exp]	78.7	0.7176
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	79.7	0.7440

Compare expression of checked genes

Lus10005870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.