Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47000 888 / 0 Glycosyl hydrolase family protein (.1) AT3G47040 866 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47010 865 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 840 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 710 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 665 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 653 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 561 / 0 Glycosyl hydrolase family protein (.1) AT5G49360 146 / 8e-37 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT1G02640 143 / 9e-36 ATBXL2, BXL2 beta-xylosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001200 [exp] 1192 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10005706 [exp] 714 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010657 [exp] 701 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 693 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 691 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 677 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 676 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10008434 [exp] 662 / 0 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013388 [exp] 659 / 0 AT5G04885 801 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042800 [exp] 971 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013500 [exp] 717 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 701 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 698 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 694 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 689 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.005G059200 [exp] 263 / 1e-83 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 246 / 3e-78 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 202 / 2e-61 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 167 / 1e-47 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005871 pacid=23176918 polypeptide=Lus10005871 locus=Lus10005871.g ID=Lus10005871.BGIv1.0 annot-version=v1.0 ATGAGCACTCCCGGCGGTTGCCTCTACAAGGACCCCAATGAACCGGTGGAAGTTCGGGTCAAGGACCTTCTTTCCCGGATGACTCTCCAAGAGAAGCTTG CCCAGATGATTCAACTCGATCGCGTCGTTGCCGATGCTCATTACCTCCGGGACCTAGCAGTCGGGAGTGTGCTGAGCACTGGCGGAAGCGCGCCTTTCGA AAATGCGTTGACCTCTGATTGGGCCGATATGGTTGATGGGTTTCAGAAGCTGGCACTGGAATCCAGGCTTGGGATACCGATTATATACGGGGTTGATGCT GTTCATGGCAACAATTGTGTTTATGGTGCCACTGTTTTCCCTCACAACGTTGGCCTTGGCGCCACAAGAGATGCAGATTTGGTGAAAAGGATAGGTGCTG CAACTGCACTTGAAGTCAGGGCAAGCGGTATTCAATATACTTTTGCTCCTTGTGTAGCTGTATGCAAGGACCCCCGCTGGGGAAGATGCTACGAGAGTTA CAGTGAAGACACTAATATAGTTACAAATATGACATCCATTATCACTGGCCTCCAGGGAGAGCCACCTGAAGGACACCCACTTGGCTATCCTTATGTTGCA GGAAGAAACAACGTAGTTGCATGTGCGAAGCATTTTGTTGGTGATGGGGGCACACACAAAGGTCTAAATGAAGGGAATACAATATGTTCATATGAAGATC TCGAGAGGATTCACATGGCTCCCTATTTGGATTGTATCTCTCAAGGTGTGGCTACCATTATGGCTTCCTATTCTAGTTGGAACGGACGGAAGCTACACAC TGACCGTTTTCTCCTGACTGAAGTCTTGAAAGATAAGCTAGGTTTTAAGGGATTCGTCATTTCTGACTGGGAAGGACTAAACAGACTTAGCCAACCTCGT GGTTCCAACTACCGTCACTGTGTTGCCAGTGCCGTTAATGCCGGAATAGATATGGTGATGGTGGGCCGGAAATATGAACAATTTGTAGATGATATAATCT CTCTTGCAACATCAGGGGAGATATCAACAGCCAGGATTGATGATGCAGTTGAAAGAATACTCAGAGTGAAGTTTATTGCTGGTCTATTTGAACATCCCTT TGCTGATAGGTCTTTACTAGAGATAGTTGGTTGCAAGCTACACAGAGACTTGGCACAGGAAGCAGTCCGCAAATCATTGGTTCTGCTGAAAAATGGCAAG GATTCAAACAAACCTTTGCTCCCATTGGACAAGAACGCTAGAAAGATACTTGTCGCTGGGACTCATGCTGATAATCTTGGATATCAGTGTGGAGGATGGA CCATAGCTTGGTACGGGTTAGGCGGCAGGATTACCATTGGCACTACCATTCTGGATGCAGTCAGGAAAGCAGTTGGAGAGAACACAGAAGTCATCTTCGA GGAATATCCTTCACCGGAAACCTTAGCACGTAAGGACTTCTCCTACGCCATTGTAGCCATCGGTGAACCTCCATATGCAGAATTTACAGGGGACGATCCG GAGCTAGTTATCCAAAGTGAAGGACGTGAGATTGTCAGCTTGGTAGCTGACAGAATCCCCACACTGGCGATTCTTGTATCTGGAAGACCACTAGTCCTAG AACCACATTTACTGGAGAAGATAGAAGCACTTGTTGCTGCCTGGTTGCCTGGAACTGAAGGGGATGGGATTGCGGATGTTATCTTTGGTGGAGAAGATTT TAAGGGACAGTTGCCAGTGACATGGTTCAAGAAGGTTGATCAGTTGCCAATGAAATTCGACGGTGGGATTAACAATGTATATGACCCTCTGTTTCCTCTT GGGTTTGGACTTACTTACAAATGA
AA sequence Show only first row Show all	>Lus10005871 pacid=23176918 polypeptide=Lus10005871 locus=Lus10005871.g ID=Lus10005871.BGIv1.0 annot-version=v1.0 MSTPGGCLYKDPNEPVEVRVKDLLSRMTLQEKLAQMIQLDRVVADAHYLRDLAVGSVLSTGGSAPFENALTSDWADMVDGFQKLALESRLGIPIIYGVDA VHGNNCVYGATVFPHNVGLGATRDADLVKRIGAATALEVRASGIQYTFAPCVAVCKDPRWGRCYESYSEDTNIVTNMTSIITGLQGEPPEGHPLGYPYVA GRNNVVACAKHFVGDGGTHKGLNEGNTICSYEDLERIHMAPYLDCISQGVATIMASYSSWNGRKLHTDRFLLTEVLKDKLGFKGFVISDWEGLNRLSQPR GSNYRHCVASAVNAGIDMVMVGRKYEQFVDDIISLATSGEISTARIDDAVERILRVKFIAGLFEHPFADRSLLEIVGCKLHRDLAQEAVRKSLVLLKNGK DSNKPLLPLDKNARKILVAGTHADNLGYQCGGWTIAWYGLGGRITIGTTILDAVRKAVGENTEVIFEEYPSPETLARKDFSYAIVAIGEPPYAEFTGDDP ELVIQSEGREIVSLVADRIPTLAILVSGRPLVLEPHLLEKIEALVAAWLPGTEGDGIADVIFGGEDFKGQLPVTWFKKVDQLPMKFDGGINNVYDPLFPL GFGLTYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	1.7	0.9616
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	2.0	0.9562
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	5.2	0.9479
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	5.5	0.9409
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	6.0	0.9250
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10038872 [exp]	6.3	0.9207
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	8.2	0.9445
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035463 [exp]	9.2	0.9178
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	9.4	0.9258
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	10.2	0.9232

Compare expression of checked genes

Lus10005871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.